Hb_000110_170

Information

Type -
Description -
Location Contig110: 224077-232240
Sequence    

Annotation

kegg
ID rcu:RCOM_1202350
description arginine biosynthesis protein argJ 1, putative (EC:2.3.1.35)
nr
ID XP_012074889.1
description PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID B9SZB6
description Arginine biosynthesis bifunctional protein ArgJ, chloroplastic OS=Ricinus communis GN=RCOM_1202350 PE=3 SV=1
trembl
ID A0A067DWL5
description Arginine biosynthesis bifunctional protein ArgJ, chloroplastic OS=Citrus sinensis GN=CISIN_1g012099mg PE=3 SV=1
Gene Ontology
ID GO:0009570
description arginine biosynthesis bifunctional protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03053: 223988-232219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_170 0.0 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000878_020 0.0734083775 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
3 Hb_006588_080 0.0922956345 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
4 Hb_003540_200 0.0958502845 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
5 Hb_003020_330 0.09766405 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
6 Hb_120823_010 0.0989172731 - - -
7 Hb_001225_010 0.1018664794 - - unnamed protein product [Coffea canephora]
8 Hb_004735_050 0.102171902 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
9 Hb_007254_080 0.1041879299 - - -
10 Hb_001386_050 0.1098755954 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
11 Hb_147752_010 0.1123534232 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
12 Hb_000454_180 0.1155011972 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
13 Hb_000915_120 0.1178095755 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
14 Hb_005000_180 0.1180172594 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
15 Hb_000300_390 0.1193494896 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
16 Hb_009778_040 0.1196322511 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
17 Hb_000111_100 0.122003728 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
18 Hb_012053_010 0.122140928 - - srpk, putative [Ricinus communis]
19 Hb_011377_020 0.123143875 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
20 Hb_027472_160 0.1236667198 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]

Gene co-expression network

sample Hb_000110_170 Hb_000110_170 Hb_000878_020 Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_001225_010 Hb_001225_010 Hb_000110_170--Hb_001225_010 Hb_000878_020--Hb_006588_080 Hb_001386_050 Hb_001386_050 Hb_000878_020--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_000878_020--Hb_008948_050 Hb_002344_070 Hb_002344_070 Hb_000878_020--Hb_002344_070 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_003540_200--Hb_003020_330 Hb_003540_200--Hb_001225_010 Hb_000291_270 Hb_000291_270 Hb_003540_200--Hb_000291_270 Hb_012053_010 Hb_012053_010 Hb_003540_200--Hb_012053_010 Hb_154141_030 Hb_154141_030 Hb_003540_200--Hb_154141_030 Hb_002838_030 Hb_002838_030 Hb_003020_330--Hb_002838_030 Hb_007313_080 Hb_007313_080 Hb_003020_330--Hb_007313_080 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_000300_390 Hb_000300_390 Hb_120823_010--Hb_000300_390 Hb_000389_080 Hb_000389_080 Hb_120823_010--Hb_000389_080 Hb_120823_010--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_001172_100 Hb_001172_100 Hb_001225_010--Hb_001172_100 Hb_001225_010--Hb_003020_330 Hb_000203_020 Hb_000203_020 Hb_001225_010--Hb_000203_020 Hb_001449_090 Hb_001449_090 Hb_001225_010--Hb_001449_090 Hb_001225_010--Hb_000878_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4956 4.5807 7.04433 15.4568 3.18373 5.10569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6224 88.0668 27.47 10.8175 9.28533

CAGE analysis