Hb_000110_270

Information

Type -
Description -
Location Contig110: 304689-315143
Sequence    

Annotation

kegg
ID rcu:RCOM_0353130
description prp4, putative (EC:2.7.12.1)
nr
ID XP_002529126.1
description prp4, putative [Ricinus communis]
swissprot
ID Q5RKH1
description Serine/threonine-protein kinase PRP4 homolog OS=Rattus norvegicus GN=Prpf4b PE=1 SV=1
trembl
ID B9ST07
description Prp4, putative OS=Ricinus communis GN=RCOM_0353130 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase prpf4b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03065: 304944-305262 , PASA_asmbl_03066: 305846-306192 , PASA_asmbl_03069: 307331-308101 , PASA_asmbl_03070: 308465-312947 , PASA_asmbl_03071: 313158-315216
cDNA
(Sanger)
(ID:Location)		 049_L14.ab1: 313984-315216

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_270 0.0 - - prp4, putative [Ricinus communis]
2 Hb_001726_100 0.0860379986 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
3 Hb_000363_300 0.0895976006 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
4 Hb_005488_170 0.0976590139 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
5 Hb_005211_020 0.0999538379 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
6 Hb_004306_120 0.1012882685 - - DNA binding protein, putative [Ricinus communis]
7 Hb_012244_020 0.103885343 - - calpain, putative [Ricinus communis]
8 Hb_001726_050 0.1042529614 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
9 Hb_002609_080 0.106760149 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
10 Hb_002600_060 0.1080832138 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
11 Hb_005701_130 0.1099249679 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
12 Hb_002639_110 0.1102622959 - - hypothetical protein L484_011673 [Morus notabilis]
13 Hb_000925_090 0.1113047881 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
14 Hb_002631_250 0.1117553437 - - PREDICTED: pentatricopeptide repeat-containing protein At3g20730 [Jatropha curcas]
15 Hb_000186_080 0.1122613442 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
16 Hb_156279_010 0.112377845 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
17 Hb_003089_020 0.1129294748 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
18 Hb_065408_010 0.1136760718 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
19 Hb_001790_080 0.113722546 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X3 [Jatropha curcas]
20 Hb_010998_020 0.1139284955 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_000110_270 Hb_000110_270 Hb_001726_100 Hb_001726_100 Hb_000110_270--Hb_001726_100 Hb_000363_300 Hb_000363_300 Hb_000110_270--Hb_000363_300 Hb_005488_170 Hb_005488_170 Hb_000110_270--Hb_005488_170 Hb_005211_020 Hb_005211_020 Hb_000110_270--Hb_005211_020 Hb_004306_120 Hb_004306_120 Hb_000110_270--Hb_004306_120 Hb_012244_020 Hb_012244_020 Hb_000110_270--Hb_012244_020 Hb_007120_060 Hb_007120_060 Hb_001726_100--Hb_007120_060 Hb_001726_050 Hb_001726_050 Hb_001726_100--Hb_001726_050 Hb_000925_090 Hb_000925_090 Hb_001726_100--Hb_000925_090 Hb_001726_100--Hb_000363_300 Hb_000656_060 Hb_000656_060 Hb_001726_100--Hb_000656_060 Hb_001726_100--Hb_012244_020 Hb_000363_300--Hb_012244_020 Hb_011174_020 Hb_011174_020 Hb_000363_300--Hb_011174_020 Hb_001377_100 Hb_001377_100 Hb_000363_300--Hb_001377_100 Hb_006031_010 Hb_006031_010 Hb_000363_300--Hb_006031_010 Hb_135572_010 Hb_135572_010 Hb_000363_300--Hb_135572_010 Hb_012022_060 Hb_012022_060 Hb_000363_300--Hb_012022_060 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005348_010 Hb_005348_010 Hb_005488_170--Hb_005348_010 Hb_005211_020--Hb_002600_060 Hb_000826_070 Hb_000826_070 Hb_005211_020--Hb_000826_070 Hb_002973_110 Hb_002973_110 Hb_005211_020--Hb_002973_110 Hb_000608_300 Hb_000608_300 Hb_005211_020--Hb_000608_300 Hb_013459_020 Hb_013459_020 Hb_005211_020--Hb_013459_020 Hb_005211_020--Hb_000925_090 Hb_002609_080 Hb_002609_080 Hb_004306_120--Hb_002609_080 Hb_011021_050 Hb_011021_050 Hb_004306_120--Hb_011021_050 Hb_003849_280 Hb_003849_280 Hb_004306_120--Hb_003849_280 Hb_004306_120--Hb_000363_300 Hb_005408_030 Hb_005408_030 Hb_004306_120--Hb_005408_030 Hb_001648_020 Hb_001648_020 Hb_004306_120--Hb_001648_020 Hb_005186_040 Hb_005186_040 Hb_012244_020--Hb_005186_040 Hb_012244_020--Hb_011174_020 Hb_012244_020--Hb_001648_020 Hb_012244_020--Hb_000925_090 Hb_000934_210 Hb_000934_210 Hb_012244_020--Hb_000934_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.45936 17.3746 6.58173 10.311 11.2762 9.54504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.04464 6.84704 7.15339 14.7242 35.7849

CAGE analysis