Hb_000110_310

Information

Type rubber biosynthesis
Description Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex
Location Contig110: 335401-340790
Sequence    

Annotation

kegg
ID rcu:RCOM_0352880
description Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative (EC:2.3.1.168)
nr
ID XP_002529121.1
description Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9SQI8
description Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana GN=LTA2 PE=2 SV=1
trembl
ID B9ST02
description Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0352880 PE=3 SV=1
Gene Ontology
ID GO:0009534
description dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03076: 335513-340785 , PASA_asmbl_03077: 338584-338972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_310 0.0 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
2 Hb_006153_070 0.057613275 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
3 Hb_009898_050 0.0581590155 - - PREDICTED: beta-taxilin [Jatropha curcas]
4 Hb_000579_120 0.0593344266 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
5 Hb_000270_680 0.0686443591 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
6 Hb_001472_100 0.0720216379 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
7 Hb_001268_240 0.0732662344 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
8 Hb_000007_390 0.0752514251 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
9 Hb_107879_010 0.0782355609 - - phosphoglycerate mutase, putative [Ricinus communis]
10 Hb_001232_190 0.0790601855 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
11 Hb_121729_010 0.0794187166 - - DNA binding protein, putative [Ricinus communis]
12 Hb_002304_150 0.0800075024 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
13 Hb_007831_010 0.0803544524 - - PREDICTED: oligoribonuclease [Vitis vinifera]
14 Hb_001357_350 0.0808843787 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008616_050 0.0817258814 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
16 Hb_000058_130 0.0834620627 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
17 Hb_001711_020 0.084088804 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
18 Hb_002641_060 0.0844064643 - - prefoldin subunit, putative [Ricinus communis]
19 Hb_000976_120 0.086282091 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
20 Hb_003513_010 0.0877492528 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000110_310 Hb_000110_310 Hb_006153_070 Hb_006153_070 Hb_000110_310--Hb_006153_070 Hb_009898_050 Hb_009898_050 Hb_000110_310--Hb_009898_050 Hb_000579_120 Hb_000579_120 Hb_000110_310--Hb_000579_120 Hb_000270_680 Hb_000270_680 Hb_000110_310--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_000110_310--Hb_001472_100 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_006153_070--Hb_009898_050 Hb_007831_010 Hb_007831_010 Hb_006153_070--Hb_007831_010 Hb_168978_030 Hb_168978_030 Hb_006153_070--Hb_168978_030 Hb_000640_170 Hb_000640_170 Hb_006153_070--Hb_000640_170 Hb_006153_070--Hb_000579_120 Hb_008616_050 Hb_008616_050 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_009898_050--Hb_000640_170 Hb_009898_050--Hb_000579_120 Hb_000058_130 Hb_000058_130 Hb_000579_120--Hb_000058_130 Hb_001232_190 Hb_001232_190 Hb_000579_120--Hb_001232_190 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000207_150 Hb_000207_150 Hb_000579_120--Hb_000207_150 Hb_000007_390 Hb_000007_390 Hb_000270_680--Hb_000007_390 Hb_000297_160 Hb_000297_160 Hb_000270_680--Hb_000297_160 Hb_107879_010 Hb_107879_010 Hb_000270_680--Hb_107879_010 Hb_003943_050 Hb_003943_050 Hb_000270_680--Hb_003943_050 Hb_000270_680--Hb_001472_100 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_001472_100--Hb_107879_010 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180 Hb_000417_130 Hb_000417_130 Hb_001268_240--Hb_000417_130 Hb_001357_350 Hb_001357_350 Hb_001268_240--Hb_001357_350 Hb_001268_240--Hb_000640_170 Hb_001318_280 Hb_001318_280 Hb_001268_240--Hb_001318_280 Hb_001268_240--Hb_009898_050 Hb_172632_100 Hb_172632_100 Hb_001268_240--Hb_172632_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.6536 2.73585 11.6223 9.82685 6.83743 8.82828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.86494 9.12413 6.83376 6.97893 8.34628

CAGE analysis