Hb_000111_010

Information

Type -
Description -
Location Contig111: 49399-54778
Sequence    

Annotation

kegg
ID rcu:RCOM_1452510
description DNA-directed RNA polymerase, putative
nr
ID XP_002513060.1
description DNA-directed RNA polymerase, putative [Ricinus communis]
swissprot
ID Q5D869
description DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1
trembl
ID B9RGA8
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_1452510 PE=3 SV=1
Gene Ontology
ID GO:0044451
description dna-directed rna polymerase v subunit 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_010 0.0 - - DNA-directed RNA polymerase, putative [Ricinus communis]
2 Hb_000788_080 0.1334910579 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
3 Hb_012053_040 0.1608603571 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
4 Hb_091433_040 0.1619545445 - - PREDICTED: josephin-like protein [Jatropha curcas]
5 Hb_005914_070 0.1671461388 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000103_110 0.1695811721 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
7 Hb_000363_150 0.1719141183 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
8 Hb_002759_240 0.1753584476 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
9 Hb_000227_200 0.179643891 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
10 Hb_000809_030 0.1879844428 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
11 Hb_001159_200 0.1904815579 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
12 Hb_002876_370 0.1921023912 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
13 Hb_001511_140 0.1923356637 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
14 Hb_001894_170 0.1938090028 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
15 Hb_000784_030 0.1959061217 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
16 Hb_005224_030 0.1977164189 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
17 Hb_001741_040 0.2004630933 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
18 Hb_003095_070 0.2039404547 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
19 Hb_001396_190 0.2042531386 - - PREDICTED: uncharacterized protein LOC105123025 [Populus euphratica]
20 Hb_000368_060 0.2044211766 - - thioredoxin H-type 6 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000111_010 Hb_000111_010 Hb_000788_080 Hb_000788_080 Hb_000111_010--Hb_000788_080 Hb_012053_040 Hb_012053_040 Hb_000111_010--Hb_012053_040 Hb_091433_040 Hb_091433_040 Hb_000111_010--Hb_091433_040 Hb_005914_070 Hb_005914_070 Hb_000111_010--Hb_005914_070 Hb_000103_110 Hb_000103_110 Hb_000111_010--Hb_000103_110 Hb_000363_150 Hb_000363_150 Hb_000111_010--Hb_000363_150 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_005000_160 Hb_005000_160 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_007426_050 Hb_007426_050 Hb_012053_040--Hb_007426_050 Hb_012053_040--Hb_001511_140 Hb_012053_040--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_012053_040--Hb_001776_170 Hb_001143_070 Hb_001143_070 Hb_012053_040--Hb_001143_070 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_000227_200 Hb_000227_200 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000784_040 Hb_000784_040 Hb_091433_040--Hb_000784_040 Hb_003052_040 Hb_003052_040 Hb_005914_070--Hb_003052_040 Hb_005914_070--Hb_000227_200 Hb_005914_070--Hb_113906_010 Hb_001369_450 Hb_001369_450 Hb_005914_070--Hb_001369_450 Hb_000368_060 Hb_000368_060 Hb_000103_110--Hb_000368_060 Hb_004324_050 Hb_004324_050 Hb_000103_110--Hb_004324_050 Hb_000562_040 Hb_000562_040 Hb_000103_110--Hb_000562_040 Hb_000784_030 Hb_000784_030 Hb_000103_110--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_000103_110--Hb_000141_030 Hb_000157_040 Hb_000157_040 Hb_000103_110--Hb_000157_040 Hb_000856_370 Hb_000856_370 Hb_000363_150--Hb_000856_370 Hb_000363_150--Hb_012053_040 Hb_088538_010 Hb_088538_010 Hb_000363_150--Hb_088538_010 Hb_000363_150--Hb_000227_200 Hb_001158_190 Hb_001158_190 Hb_000363_150--Hb_001158_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.505492 0.0135849 0.0193011 0.0958257 0.0848451 0.228932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90824 3.47417 4.59729 0.304101 0.468793

CAGE analysis