Hb_000111_020

Information

Type -
Description -
Location Contig111: 58523-68943
Sequence    

Annotation

kegg
ID sbi:SORBI_04g003755
description SORBIDRAFT_04g003755, Sb04g003755; hypothetical protein
nr
ID XP_002453314.1
description hypothetical protein SORBIDRAFT_04g003755 [Sorghum bicolor]
swissprot
ID -
description -
trembl
ID C5XUR6
description Putative uncharacterized protein Sb04g003755 (Fragment) OS=Sorghum bicolor GN=Sb04g003755 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-directed rna polymerase v subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_020 0.0 - - hypothetical protein SORBIDRAFT_04g003755 [Sorghum bicolor]
2 Hb_001627_030 0.023499885 - - hypothetical protein JCGZ_11752 [Jatropha curcas]
3 Hb_185736_010 0.0595938819 - - -
4 Hb_007273_010 0.0710975343 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
5 Hb_187134_010 0.0791453613 - - -
6 Hb_000002_200 0.0816166399 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF096 [Brassica rapa]
7 Hb_096292_010 0.0872579606 - - hypothetical protein JCGZ_25718 [Jatropha curcas]
8 Hb_147793_010 0.1110756323 - - PREDICTED: E3 ubiquitin-protein ligase PUB24-like [Jatropha curcas]
9 Hb_034661_020 0.1126703505 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
10 Hb_041405_010 0.1713280545 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Glycine max]
11 Hb_011016_040 0.1742603688 - - calcium-dependent protein kinase, putative [Ricinus communis]
12 Hb_000143_040 0.1742844994 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_000258_190 0.1748417975 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
14 Hb_003388_090 0.1753174442 - - putative beta-D-xylosidase 5 -like protein [Gossypium arboreum]
15 Hb_000265_180 0.1761721101 - - Alpha/beta-Hydrolases superfamily protein, putative [Theobroma cacao]
16 Hb_004881_110 0.1779519427 - - -
17 Hb_001369_330 0.1780237249 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010120_010 0.1786727367 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
19 Hb_010267_010 0.179544038 - - -
20 Hb_035492_010 0.2001315621 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]

Gene co-expression network

sample Hb_000111_020 Hb_000111_020 Hb_001627_030 Hb_001627_030 Hb_000111_020--Hb_001627_030 Hb_185736_010 Hb_185736_010 Hb_000111_020--Hb_185736_010 Hb_007273_010 Hb_007273_010 Hb_000111_020--Hb_007273_010 Hb_187134_010 Hb_187134_010 Hb_000111_020--Hb_187134_010 Hb_000002_200 Hb_000002_200 Hb_000111_020--Hb_000002_200 Hb_096292_010 Hb_096292_010 Hb_000111_020--Hb_096292_010 Hb_001627_030--Hb_000002_200 Hb_001627_030--Hb_185736_010 Hb_001627_030--Hb_007273_010 Hb_001627_030--Hb_096292_010 Hb_034661_020 Hb_034661_020 Hb_001627_030--Hb_034661_020 Hb_185736_010--Hb_007273_010 Hb_185736_010--Hb_187134_010 Hb_185736_010--Hb_096292_010 Hb_011016_040 Hb_011016_040 Hb_185736_010--Hb_011016_040 Hb_007273_010--Hb_187134_010 Hb_007273_010--Hb_096292_010 Hb_007273_010--Hb_011016_040 Hb_187134_010--Hb_011016_040 Hb_000143_040 Hb_000143_040 Hb_187134_010--Hb_000143_040 Hb_000258_190 Hb_000258_190 Hb_187134_010--Hb_000258_190 Hb_000002_200--Hb_034661_020 Hb_147793_010 Hb_147793_010 Hb_000002_200--Hb_147793_010 Hb_000002_200--Hb_096292_010 Hb_000002_200--Hb_185736_010 Hb_096292_010--Hb_187134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.324842 0 0.0450834 0

CAGE analysis