Hb_000111_180

Information

Type -
Description -
Location Contig111: 206030-207224
Sequence    

Annotation

kegg
ID rcu:RCOM_1452200
description ubiquitin-protein ligase, putative
nr
ID XP_012068676.1
description PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
swissprot
ID O22193
description U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3
trembl
ID A0A067KWK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24541 PE=4 SV=1
Gene Ontology
ID GO:0016874
description u-box domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_180 0.0 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
2 Hb_000002_240 0.0945700227 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
3 Hb_000318_480 0.0947739233 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
4 Hb_006588_210 0.1019703211 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
5 Hb_014068_050 0.1050179178 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
6 Hb_000260_180 0.1058067207 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
7 Hb_007441_110 0.1106001864 - - PREDICTED: F-box/LRR-repeat protein At3g58900-like [Jatropha curcas]
8 Hb_000905_210 0.1123254601 - - PREDICTED: protein gar2 [Jatropha curcas]
9 Hb_004324_110 0.115183261 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
10 Hb_010381_030 0.1163635874 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
11 Hb_000363_120 0.1182499059 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
12 Hb_004870_050 0.1193063914 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
13 Hb_002301_170 0.1204038792 - - MAC/Perforin domain-containing protein [Theobroma cacao]
14 Hb_003925_040 0.1208118819 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
15 Hb_000094_090 0.1223388072 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
16 Hb_001410_020 0.1230825362 - - cdk8, putative [Ricinus communis]
17 Hb_000086_420 0.1233883023 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
18 Hb_001439_230 0.1249736976 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
19 Hb_007382_120 0.1257007498 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
20 Hb_000120_030 0.1260895171 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_180 Hb_000111_180 Hb_000002_240 Hb_000002_240 Hb_000111_180--Hb_000002_240 Hb_000318_480 Hb_000318_480 Hb_000111_180--Hb_000318_480 Hb_006588_210 Hb_006588_210 Hb_000111_180--Hb_006588_210 Hb_014068_050 Hb_014068_050 Hb_000111_180--Hb_014068_050 Hb_000260_180 Hb_000260_180 Hb_000111_180--Hb_000260_180 Hb_007441_110 Hb_007441_110 Hb_000111_180--Hb_007441_110 Hb_003147_060 Hb_003147_060 Hb_000002_240--Hb_003147_060 Hb_002110_160 Hb_002110_160 Hb_000002_240--Hb_002110_160 Hb_010775_030 Hb_010775_030 Hb_000002_240--Hb_010775_030 Hb_000375_290 Hb_000375_290 Hb_000002_240--Hb_000375_290 Hb_004870_050 Hb_004870_050 Hb_000002_240--Hb_004870_050 Hb_000318_480--Hb_014068_050 Hb_002301_170 Hb_002301_170 Hb_000318_480--Hb_002301_170 Hb_052764_030 Hb_052764_030 Hb_000318_480--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_000318_480--Hb_009486_160 Hb_000215_350 Hb_000215_350 Hb_000318_480--Hb_000215_350 Hb_006588_210--Hb_000260_180 Hb_001410_020 Hb_001410_020 Hb_006588_210--Hb_001410_020 Hb_000340_400 Hb_000340_400 Hb_006588_210--Hb_000340_400 Hb_006588_210--Hb_004870_050 Hb_000087_060 Hb_000087_060 Hb_006588_210--Hb_000087_060 Hb_002073_200 Hb_002073_200 Hb_006588_210--Hb_002073_200 Hb_006538_080 Hb_006538_080 Hb_014068_050--Hb_006538_080 Hb_014068_050--Hb_002301_170 Hb_000512_010 Hb_000512_010 Hb_014068_050--Hb_000512_010 Hb_014068_050--Hb_052764_030 Hb_000205_240 Hb_000205_240 Hb_014068_050--Hb_000205_240 Hb_000260_180--Hb_001410_020 Hb_012779_090 Hb_012779_090 Hb_000260_180--Hb_012779_090 Hb_162275_050 Hb_162275_050 Hb_000260_180--Hb_162275_050 Hb_005541_010 Hb_005541_010 Hb_000260_180--Hb_005541_010 Hb_000025_730 Hb_000025_730 Hb_000260_180--Hb_000025_730 Hb_007441_110--Hb_001410_020 Hb_007441_110--Hb_000260_180 Hb_007441_110--Hb_006588_210 Hb_000130_240 Hb_000130_240 Hb_007441_110--Hb_000130_240 Hb_021576_110 Hb_021576_110 Hb_007441_110--Hb_021576_110 Hb_007441_110--Hb_000087_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.80574 19.7925 11.1226 7.23558 7.01802 5.12773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02838 13.3666 5.34804 7.69 4.59146

CAGE analysis