Hb_000111_200

Information

Type -
Description -
Location Contig111: 221812-222752
Sequence    

Annotation

kegg
ID cmo:103489653
description CYSTM1 family protein A-like
nr
ID XP_008447127.1
description PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
swissprot
ID -
description -
trembl
ID B9RG84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1452060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03388: 220422-221429 , PASA_asmbl_03389: 221892-222561 , PASA_asmbl_03390: 221909-222416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_200 0.0 - - PREDICTED: CYSTM1 family protein A-like [Cucumis melo]
2 Hb_023768_020 0.1309773312 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001404_030 0.1329181583 - - DWNN domain isoform 3 [Theobroma cacao]
4 Hb_003209_120 0.1481116615 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
5 Hb_000661_010 0.1747033373 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
6 Hb_001195_650 0.1764157694 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
7 Hb_008406_030 0.1779188122 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
8 Hb_004241_200 0.1818429688 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
9 Hb_108670_010 0.1861433844 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
10 Hb_000021_010 0.1869168336 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005170_020 0.1946173489 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
12 Hb_120117_010 0.1978458358 - - Disease resistance protein RFL1, putative [Ricinus communis]
13 Hb_001115_100 0.1991991241 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
14 Hb_027905_010 0.1999174947 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
15 Hb_003209_040 0.200075479 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
16 Hb_000777_020 0.2037679342 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
17 Hb_001787_070 0.2073898528 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
18 Hb_004157_060 0.2095672513 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Jatropha curcas]
19 Hb_000163_040 0.2117310211 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
20 Hb_008643_020 0.2126187856 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000111_200 Hb_000111_200 Hb_023768_020 Hb_023768_020 Hb_000111_200--Hb_023768_020 Hb_001404_030 Hb_001404_030 Hb_000111_200--Hb_001404_030 Hb_003209_120 Hb_003209_120 Hb_000111_200--Hb_003209_120 Hb_000661_010 Hb_000661_010 Hb_000111_200--Hb_000661_010 Hb_001195_650 Hb_001195_650 Hb_000111_200--Hb_001195_650 Hb_008406_030 Hb_008406_030 Hb_000111_200--Hb_008406_030 Hb_023768_020--Hb_001404_030 Hb_023768_020--Hb_008406_030 Hb_023768_020--Hb_003209_120 Hb_001787_070 Hb_001787_070 Hb_023768_020--Hb_001787_070 Hb_004241_200 Hb_004241_200 Hb_023768_020--Hb_004241_200 Hb_001404_030--Hb_003209_120 Hb_001115_100 Hb_001115_100 Hb_001404_030--Hb_001115_100 Hb_005170_020 Hb_005170_020 Hb_001404_030--Hb_005170_020 Hb_027905_010 Hb_027905_010 Hb_001404_030--Hb_027905_010 Hb_000358_170 Hb_000358_170 Hb_003209_120--Hb_000358_170 Hb_003209_040 Hb_003209_040 Hb_003209_120--Hb_003209_040 Hb_003209_120--Hb_001115_100 Hb_003209_120--Hb_027905_010 Hb_000777_020 Hb_000777_020 Hb_003209_120--Hb_000777_020 Hb_001257_120 Hb_001257_120 Hb_003209_120--Hb_001257_120 Hb_000661_010--Hb_000777_020 Hb_005389_090 Hb_005389_090 Hb_000661_010--Hb_005389_090 Hb_009620_010 Hb_009620_010 Hb_000661_010--Hb_009620_010 Hb_010142_040 Hb_010142_040 Hb_000661_010--Hb_010142_040 Hb_132517_010 Hb_132517_010 Hb_000661_010--Hb_132517_010 Hb_008725_190 Hb_008725_190 Hb_000661_010--Hb_008725_190 Hb_001195_650--Hb_027905_010 Hb_001195_650--Hb_003209_040 Hb_004586_230 Hb_004586_230 Hb_001195_650--Hb_004586_230 Hb_000983_110 Hb_000983_110 Hb_001195_650--Hb_000983_110 Hb_001195_650--Hb_000777_020 Hb_001195_650--Hb_004241_200 Hb_008406_030--Hb_004241_200 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001472_140 Hb_001472_140 Hb_008406_030--Hb_001472_140 Hb_008406_030--Hb_001195_650 Hb_004297_080 Hb_004297_080 Hb_008406_030--Hb_004297_080 Hb_008406_030--Hb_027905_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 128.464 63.8828 198.637 0.459917 1.93438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.5712 25.5871 0.410953 9.59396 3.12524

CAGE analysis