Hb_000111_230

Information

Type -
Description -
Location Contig111: 261172-266248
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_230 0.0 - - -
2 Hb_004241_010 0.211197095 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_069022_010 0.2221208087 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005714_050 0.2288266675 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
5 Hb_032974_010 0.235551646 - - -
6 Hb_000414_150 0.2475251636 - - mta/sah nucleosidase, putative [Ricinus communis]
7 Hb_002157_090 0.2600971732 - - hypothetical protein VITISV_041741 [Vitis vinifera]
8 Hb_000445_190 0.269866253 - - -
9 Hb_012379_010 0.2758600338 - - -
10 Hb_000025_440 0.2790298145 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
11 Hb_001022_040 0.2814180922 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
12 Hb_000975_270 0.2925444722 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
13 Hb_000749_080 0.2984003392 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
14 Hb_004102_030 0.3085834463 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
15 Hb_148891_010 0.3111329916 - - -
16 Hb_001563_020 0.3117432717 transcription factor TF Family: TRAF aberrant large forked product, putative [Ricinus communis]
17 Hb_000803_040 0.3126652371 - - -
18 Hb_006816_400 0.3141012372 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
19 Hb_021906_010 0.3193412142 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
20 Hb_084889_010 0.3209180489 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_230 Hb_000111_230 Hb_004241_010 Hb_004241_010 Hb_000111_230--Hb_004241_010 Hb_069022_010 Hb_069022_010 Hb_000111_230--Hb_069022_010 Hb_005714_050 Hb_005714_050 Hb_000111_230--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000111_230--Hb_032974_010 Hb_000414_150 Hb_000414_150 Hb_000111_230--Hb_000414_150 Hb_002157_090 Hb_002157_090 Hb_000111_230--Hb_002157_090 Hb_012379_010 Hb_012379_010 Hb_004241_010--Hb_012379_010 Hb_004241_010--Hb_002157_090 Hb_002259_140 Hb_002259_140 Hb_004241_010--Hb_002259_140 Hb_001584_030 Hb_001584_030 Hb_004241_010--Hb_001584_030 Hb_004241_010--Hb_000414_150 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_069022_010--Hb_005714_050 Hb_069022_010--Hb_032974_010 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_000975_270 Hb_000975_270 Hb_069022_010--Hb_000975_270 Hb_005714_050--Hb_032974_010 Hb_005714_050--Hb_000975_270 Hb_000025_440 Hb_000025_440 Hb_005714_050--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_005714_050--Hb_156503_040 Hb_032974_010--Hb_000975_270 Hb_084889_010 Hb_084889_010 Hb_032974_010--Hb_084889_010 Hb_001017_080 Hb_001017_080 Hb_032974_010--Hb_001017_080 Hb_002094_040 Hb_002094_040 Hb_000414_150--Hb_002094_040 Hb_006376_010 Hb_006376_010 Hb_000414_150--Hb_006376_010 Hb_001563_020 Hb_001563_020 Hb_000414_150--Hb_001563_020 Hb_000414_150--Hb_005714_050 Hb_002157_090--Hb_001584_030 Hb_002157_090--Hb_001563_020 Hb_015586_010 Hb_015586_010 Hb_002157_090--Hb_015586_010 Hb_002157_090--Hb_012379_010 Hb_012008_010 Hb_012008_010 Hb_002157_090--Hb_012008_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120922 0.0542044 0.107016 0.0656993 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328737 0.38732 0 0 0

CAGE analysis