Hb_000111_280

Information

Type -
Description -
Location Contig111: 298155-302266
Sequence    

Annotation

kegg
ID rcu:RCOM_1452020
description diphosphoinositol polyphosphate phosphohydrolase, putative
nr
ID XP_002513032.1
description diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
swissprot
ID Q9LHK1
description Nudix hydrolase 16, mitochondrial OS=Arabidopsis thaliana GN=NUDT16 PE=2 SV=1
trembl
ID B9RG80
description Diphosphoinositol polyphosphate phosphohydrolase, putative OS=Ricinus communis GN=RCOM_1452020 PE=3 SV=1
Gene Ontology
ID GO:0008486
description nudix hydrolase mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03397: 300878-302226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_280 0.0 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
2 Hb_000648_060 0.0957096998 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
3 Hb_183963_020 0.0962654396 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
4 Hb_005694_080 0.0999496201 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
5 Hb_007021_020 0.1038088033 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
6 Hb_009252_130 0.1041373994 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
7 Hb_000567_170 0.1061157465 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
8 Hb_000051_040 0.1076322485 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
9 Hb_000212_260 0.1083840849 - - acyl-carrier-protein [Triadica sebifera]
10 Hb_002307_090 0.108472552 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
11 Hb_000599_090 0.1115557653 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
12 Hb_001621_180 0.1116982313 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
13 Hb_011609_180 0.1123371805 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
14 Hb_009404_020 0.1143946841 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003216_100 0.1145300138 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
16 Hb_000815_270 0.1147211025 - - conserved hypothetical protein [Ricinus communis]
17 Hb_065500_050 0.1152629618 - - lipoate-protein ligase B, putative [Ricinus communis]
18 Hb_024650_020 0.1153986062 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
19 Hb_000085_300 0.1171008515 - - -
20 Hb_015934_020 0.1188997396 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_280 Hb_000111_280 Hb_000648_060 Hb_000648_060 Hb_000111_280--Hb_000648_060 Hb_183963_020 Hb_183963_020 Hb_000111_280--Hb_183963_020 Hb_005694_080 Hb_005694_080 Hb_000111_280--Hb_005694_080 Hb_007021_020 Hb_007021_020 Hb_000111_280--Hb_007021_020 Hb_009252_130 Hb_009252_130 Hb_000111_280--Hb_009252_130 Hb_000567_170 Hb_000567_170 Hb_000111_280--Hb_000567_170 Hb_002918_200 Hb_002918_200 Hb_000648_060--Hb_002918_200 Hb_000212_260 Hb_000212_260 Hb_000648_060--Hb_000212_260 Hb_004108_230 Hb_004108_230 Hb_000648_060--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_000648_060--Hb_003175_040 Hb_003927_130 Hb_003927_130 Hb_000648_060--Hb_003927_130 Hb_001538_110 Hb_001538_110 Hb_000648_060--Hb_001538_110 Hb_025087_010 Hb_025087_010 Hb_183963_020--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_001722_040 Hb_001722_040 Hb_183963_020--Hb_001722_040 Hb_001366_230 Hb_001366_230 Hb_183963_020--Hb_001366_230 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_007101_130 Hb_007101_130 Hb_005694_080--Hb_007101_130 Hb_000030_100 Hb_000030_100 Hb_005694_080--Hb_000030_100 Hb_000883_050 Hb_000883_050 Hb_005694_080--Hb_000883_050 Hb_008289_060 Hb_008289_060 Hb_005694_080--Hb_008289_060 Hb_000753_130 Hb_000753_130 Hb_005694_080--Hb_000753_130 Hb_005694_080--Hb_000648_060 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_000567_170--Hb_000212_260 Hb_000069_100 Hb_000069_100 Hb_000567_170--Hb_000069_100 Hb_001616_060 Hb_001616_060 Hb_000567_170--Hb_001616_060 Hb_000028_400 Hb_000028_400 Hb_000567_170--Hb_000028_400 Hb_006831_030 Hb_006831_030 Hb_000567_170--Hb_006831_030 Hb_000567_170--Hb_007021_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0231 0.791064 2.85355 1.13529 10.0111 11.0863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1791 28.4064 20.0993 3.44679 1.59935

CAGE analysis