Hb_000111_290

Information

Type -
Description -
Location Contig111: 302536-316256
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06680g
description hypothetical protein
nr
ID XP_012068697.1
description PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
swissprot
ID Q9FY48
description E3 ubiquitin-protein ligase KEG OS=Arabidopsis thaliana GN=KEG PE=1 SV=2
trembl
ID A0A067L7R5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24549 PE=4 SV=1
Gene Ontology
ID GO:0005802
description e3 ubiquitin-protein ligase keg isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03399: 309417-309816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_290 0.0 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
2 Hb_001417_030 0.0448225607 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
3 Hb_004324_130 0.0510569064 - - polypyrimidine tract binding protein, putative [Ricinus communis]
4 Hb_002456_010 0.0526641598 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
5 Hb_003913_070 0.0543530771 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
6 Hb_000614_240 0.0550769353 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
7 Hb_001999_310 0.0593198873 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
8 Hb_000107_490 0.0598210973 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
9 Hb_003411_040 0.0607470266 - - unnamed protein product [Coffea canephora]
10 Hb_001500_140 0.0619997873 - - pelota, putative [Ricinus communis]
11 Hb_000792_010 0.0627968639 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
12 Hb_000181_400 0.0631811214 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
13 Hb_007416_120 0.0634859546 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
14 Hb_000083_120 0.0646231751 - - transcription factor, putative [Ricinus communis]
15 Hb_011063_050 0.065082584 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
16 Hb_001876_050 0.0654078729 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
17 Hb_004567_090 0.0659987795 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
18 Hb_019863_070 0.0662287176 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
19 Hb_011016_050 0.0662934191 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
20 Hb_002518_260 0.0672799984 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_000111_290 Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_000111_290--Hb_001417_030 Hb_004324_130 Hb_004324_130 Hb_000111_290--Hb_004324_130 Hb_002456_010 Hb_002456_010 Hb_000111_290--Hb_002456_010 Hb_003913_070 Hb_003913_070 Hb_000111_290--Hb_003913_070 Hb_000614_240 Hb_000614_240 Hb_000111_290--Hb_000614_240 Hb_001999_310 Hb_001999_310 Hb_000111_290--Hb_001999_310 Hb_001417_030--Hb_003913_070 Hb_000792_010 Hb_000792_010 Hb_001417_030--Hb_000792_010 Hb_002518_260 Hb_002518_260 Hb_001417_030--Hb_002518_260 Hb_003411_040 Hb_003411_040 Hb_001417_030--Hb_003411_040 Hb_001417_030--Hb_000614_240 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_001876_050 Hb_001876_050 Hb_004324_130--Hb_001876_050 Hb_008725_230 Hb_008725_230 Hb_004324_130--Hb_008725_230 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_002456_010--Hb_001876_050 Hb_002456_010--Hb_000614_240 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300 Hb_003734_010 Hb_003734_010 Hb_003913_070--Hb_003734_010 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003913_070--Hb_003411_040 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_001671_100 Hb_001671_100 Hb_001999_310--Hb_001671_100 Hb_027073_020 Hb_027073_020 Hb_001999_310--Hb_027073_020 Hb_001999_310--Hb_001876_050 Hb_001500_140 Hb_001500_140 Hb_001999_310--Hb_001500_140 Hb_029243_030 Hb_029243_030 Hb_001999_310--Hb_029243_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25703 7.2047 4.15401 6.2647 5.00087 6.21399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11818 6.3501 6.85078 9.0543 6.39761

CAGE analysis