Hb_000111_300

Information

Type -
Description -
Location Contig111: 318712-319116
Sequence    

Annotation

kegg
ID rcu:RCOM_1451990
description protein with unknown function
nr
ID XP_012068696.1
description PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
swissprot
ID Q9LDH1
description Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana GN=SIB1 PE=1 SV=1
trembl
ID A0A067L8W8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24548 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 033_O15.ab1: 318564-319201

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_300 0.0 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
2 Hb_002301_200 0.1840273846 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
3 Hb_000417_290 0.1919606268 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001863_100 0.2010184981 - - conserved hypothetical protein [Ricinus communis]
5 Hb_038758_010 0.2035053844 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_002217_440 0.2044677164 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_008616_060 0.2108467065 - - syntaxin, putative [Ricinus communis]
8 Hb_005048_050 0.2126720315 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
9 Hb_000333_130 0.2148047736 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_003504_040 0.2305721409 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
11 Hb_001486_150 0.2332190931 - - -
12 Hb_000625_110 0.2336134522 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
13 Hb_001113_030 0.233744874 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
14 Hb_001810_010 0.2359125788 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
15 Hb_006501_120 0.2386940111 - - hypothetical protein JCGZ_07378 [Jatropha curcas]
16 Hb_000142_020 0.2394184115 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_124315_030 0.2396695205 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
18 Hb_000275_070 0.2400373649 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
19 Hb_011689_140 0.2408215378 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
20 Hb_000685_060 0.2409465898 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_300 Hb_000111_300 Hb_002301_200 Hb_002301_200 Hb_000111_300--Hb_002301_200 Hb_000417_290 Hb_000417_290 Hb_000111_300--Hb_000417_290 Hb_001863_100 Hb_001863_100 Hb_000111_300--Hb_001863_100 Hb_038758_010 Hb_038758_010 Hb_000111_300--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000111_300--Hb_002217_440 Hb_008616_060 Hb_008616_060 Hb_000111_300--Hb_008616_060 Hb_002284_020 Hb_002284_020 Hb_002301_200--Hb_002284_020 Hb_143629_030 Hb_143629_030 Hb_002301_200--Hb_143629_030 Hb_000574_120 Hb_000574_120 Hb_002301_200--Hb_000574_120 Hb_000975_330 Hb_000975_330 Hb_002301_200--Hb_000975_330 Hb_065500_040 Hb_065500_040 Hb_002301_200--Hb_065500_040 Hb_000627_140 Hb_000627_140 Hb_000417_290--Hb_000627_140 Hb_004586_380 Hb_004586_380 Hb_000417_290--Hb_004586_380 Hb_045810_010 Hb_045810_010 Hb_000417_290--Hb_045810_010 Hb_000532_060 Hb_000532_060 Hb_000417_290--Hb_000532_060 Hb_001691_190 Hb_001691_190 Hb_000417_290--Hb_001691_190 Hb_006351_080 Hb_006351_080 Hb_000417_290--Hb_006351_080 Hb_000333_130 Hb_000333_130 Hb_001863_100--Hb_000333_130 Hb_003938_010 Hb_003938_010 Hb_001863_100--Hb_003938_010 Hb_012055_100 Hb_012055_100 Hb_001863_100--Hb_012055_100 Hb_005081_080 Hb_005081_080 Hb_001863_100--Hb_005081_080 Hb_000703_320 Hb_000703_320 Hb_001863_100--Hb_000703_320 Hb_000260_320 Hb_000260_320 Hb_001863_100--Hb_000260_320 Hb_000142_020 Hb_000142_020 Hb_038758_010--Hb_000142_020 Hb_000877_090 Hb_000877_090 Hb_038758_010--Hb_000877_090 Hb_038758_010--Hb_002217_440 Hb_000625_110 Hb_000625_110 Hb_038758_010--Hb_000625_110 Hb_001810_010 Hb_001810_010 Hb_038758_010--Hb_001810_010 Hb_038758_010--Hb_012055_100 Hb_013057_030 Hb_013057_030 Hb_002217_440--Hb_013057_030 Hb_002217_440--Hb_001810_010 Hb_048653_020 Hb_048653_020 Hb_002217_440--Hb_048653_020 Hb_002217_440--Hb_000417_290 Hb_002217_440--Hb_008616_060 Hb_048653_040 Hb_048653_040 Hb_002217_440--Hb_048653_040 Hb_004230_060 Hb_004230_060 Hb_008616_060--Hb_004230_060 Hb_008616_060--Hb_001810_010 Hb_008616_060--Hb_000333_130 Hb_003504_040 Hb_003504_040 Hb_008616_060--Hb_003504_040 Hb_010962_030 Hb_010962_030 Hb_008616_060--Hb_010962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0821559 48.8226 3.06378 3.545 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16762 7.48982 0.736728 17.5112 0.269772

CAGE analysis