Hb_000111_320

Information

Type transcription factor
Description TF Family: bZIP
Location Contig111: 329487-338138
Sequence    

Annotation

kegg
ID rcu:RCOM_1451970
description Transcription factor HBP-1b(c1), putative
nr
ID XP_002513027.1
description Transcription factor HBP-1b(c1), putative [Ricinus communis]
swissprot
ID Q41558
description Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2
trembl
ID B9RG75
description Transcription factor HBP-1b(C1), putative OS=Ricinus communis GN=RCOM_1451970 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tga2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03403: 329521-338102 , PASA_asmbl_03404: 336058-336491 , PASA_asmbl_03406: 334217-334758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_320 0.0 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
2 Hb_000392_430 0.0439619372 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
3 Hb_000466_140 0.045761055 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
4 Hb_001314_050 0.0604313494 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
5 Hb_001247_310 0.0626258064 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s00450g [Populus trichocarpa]
6 Hb_000138_100 0.0663735969 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
7 Hb_002811_180 0.0665313037 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004567_090 0.069307641 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
9 Hb_004846_220 0.071856694 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
10 Hb_011674_020 0.0721013168 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
11 Hb_000441_200 0.0724803109 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
12 Hb_004109_080 0.0728247338 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
13 Hb_001876_050 0.0748111047 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
14 Hb_168978_030 0.0748749713 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 8 [Jatropha curcas]
15 Hb_012498_010 0.075666863 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
16 Hb_000640_170 0.0756801475 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
17 Hb_001348_020 0.0761916954 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
18 Hb_001999_310 0.0771541104 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
19 Hb_002110_190 0.0773562098 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
20 Hb_006831_140 0.0774288689 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_320 Hb_000111_320 Hb_000392_430 Hb_000392_430 Hb_000111_320--Hb_000392_430 Hb_000466_140 Hb_000466_140 Hb_000111_320--Hb_000466_140 Hb_001314_050 Hb_001314_050 Hb_000111_320--Hb_001314_050 Hb_001247_310 Hb_001247_310 Hb_000111_320--Hb_001247_310 Hb_000138_100 Hb_000138_100 Hb_000111_320--Hb_000138_100 Hb_002811_180 Hb_002811_180 Hb_000111_320--Hb_002811_180 Hb_000392_430--Hb_001314_050 Hb_001671_100 Hb_001671_100 Hb_000392_430--Hb_001671_100 Hb_000392_430--Hb_002811_180 Hb_000948_160 Hb_000948_160 Hb_000392_430--Hb_000948_160 Hb_000392_430--Hb_000466_140 Hb_000466_140--Hb_001247_310 Hb_000749_190 Hb_000749_190 Hb_000466_140--Hb_000749_190 Hb_000466_140--Hb_002811_180 Hb_003847_130 Hb_003847_130 Hb_000466_140--Hb_003847_130 Hb_031862_100 Hb_031862_100 Hb_001314_050--Hb_031862_100 Hb_001314_050--Hb_001671_100 Hb_005914_170 Hb_005914_170 Hb_001314_050--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_001314_050--Hb_001189_070 Hb_001119_060 Hb_001119_060 Hb_001247_310--Hb_001119_060 Hb_000075_040 Hb_000075_040 Hb_001247_310--Hb_000075_040 Hb_001247_310--Hb_000392_430 Hb_004319_080 Hb_004319_080 Hb_001247_310--Hb_004319_080 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000406_200 Hb_000406_200 Hb_000138_100--Hb_000406_200 Hb_003517_040 Hb_003517_040 Hb_000138_100--Hb_003517_040 Hb_003750_050 Hb_003750_050 Hb_002811_180--Hb_003750_050 Hb_000260_330 Hb_000260_330 Hb_002811_180--Hb_000260_330 Hb_000621_010 Hb_000621_010 Hb_002811_180--Hb_000621_010 Hb_008847_030 Hb_008847_030 Hb_002811_180--Hb_008847_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17201 4.71682 6.41733 10.318 7.76569 9.36724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.33904 8.84033 6.65117 12.0538 9.27453

CAGE analysis