Hb_000111_360

Information

Type -
Description -
Location Contig111: 359391-363461
Sequence    

Annotation

kegg
ID rcu:RCOM_1264730
description hypothetical protein
nr
ID XP_002529994.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5HZL1
description ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1
trembl
ID B9SVH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1264730 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 3 -5 exoribonuclease 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03409: 357273-363510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_360 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000754_040 0.0557409928 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
3 Hb_006915_050 0.0656497527 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
4 Hb_008695_210 0.0798439988 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
5 Hb_002518_140 0.0867855984 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
6 Hb_002006_090 0.0878591435 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
7 Hb_001277_330 0.0878996503 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
8 Hb_000343_130 0.0890512208 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
9 Hb_164926_030 0.0919765578 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
10 Hb_002016_110 0.0936200786 - - transducin family protein [Populus trichocarpa]
11 Hb_000614_230 0.0951240377 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
12 Hb_000567_260 0.0962210602 - - BnaA09g41440D [Brassica napus]
13 Hb_000429_170 0.0969043154 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
14 Hb_002216_040 0.0975954117 - - PREDICTED: protein PRD1 [Jatropha curcas]
15 Hb_000445_420 0.0983606488 - - protein transporter, putative [Ricinus communis]
16 Hb_055062_030 0.098442539 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
17 Hb_003142_020 0.0987492875 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
18 Hb_163145_020 0.1004880489 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
19 Hb_002253_070 0.1006195195 transcription factor TF Family: NAC NAC transcription factor 042 [Jatropha curcas]
20 Hb_002163_020 0.100903157 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000111_360 Hb_000111_360 Hb_000754_040 Hb_000754_040 Hb_000111_360--Hb_000754_040 Hb_006915_050 Hb_006915_050 Hb_000111_360--Hb_006915_050 Hb_008695_210 Hb_008695_210 Hb_000111_360--Hb_008695_210 Hb_002518_140 Hb_002518_140 Hb_000111_360--Hb_002518_140 Hb_002006_090 Hb_002006_090 Hb_000111_360--Hb_002006_090 Hb_001277_330 Hb_001277_330 Hb_000111_360--Hb_001277_330 Hb_000754_040--Hb_006915_050 Hb_000754_040--Hb_008695_210 Hb_000754_040--Hb_001277_330 Hb_055062_030 Hb_055062_030 Hb_000754_040--Hb_055062_030 Hb_189003_080 Hb_189003_080 Hb_000754_040--Hb_189003_080 Hb_002016_110 Hb_002016_110 Hb_006915_050--Hb_002016_110 Hb_006915_050--Hb_008695_210 Hb_000907_080 Hb_000907_080 Hb_006915_050--Hb_000907_080 Hb_006915_050--Hb_189003_080 Hb_000614_230 Hb_000614_230 Hb_008695_210--Hb_000614_230 Hb_008695_210--Hb_000907_080 Hb_008695_210--Hb_189003_080 Hb_008695_210--Hb_002006_090 Hb_002518_140--Hb_001277_330 Hb_010795_010 Hb_010795_010 Hb_002518_140--Hb_010795_010 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_171900_080 Hb_171900_080 Hb_002518_140--Hb_171900_080 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020 Hb_001329_300 Hb_001329_300 Hb_002006_090--Hb_001329_300 Hb_002006_090--Hb_000614_230 Hb_000001_140 Hb_000001_140 Hb_002006_090--Hb_000001_140 Hb_001085_170 Hb_001085_170 Hb_002006_090--Hb_001085_170 Hb_002006_090--Hb_006915_050 Hb_011316_040 Hb_011316_040 Hb_001277_330--Hb_011316_040 Hb_002687_110 Hb_002687_110 Hb_001277_330--Hb_002687_110 Hb_001277_330--Hb_006915_050 Hb_004994_100 Hb_004994_100 Hb_001277_330--Hb_004994_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
120.961 62.8828 28.6078 40.3332 70.1605 78.2735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.664 107.917 164.831 58.3835 58.3872

CAGE analysis