Hb_000111_390

Information

Type -
Description -
Location Contig111: 377730-382225
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06910g
description POPTRDRAFT_547790; hypothetical protein
nr
ID XP_012068717.1
description PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9GLX4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s06910g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03418: 377656-382226 , PASA_asmbl_03419: 379736-380399 , PASA_asmbl_03420: 378887-381065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_390 0.0 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
2 Hb_011671_110 0.1071926528 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
3 Hb_086639_050 0.1087282353 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_001627_010 0.1126924938 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
5 Hb_047442_010 0.1137847032 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
6 Hb_002249_170 0.1208585035 - - copine, putative [Ricinus communis]
7 Hb_001318_150 0.1216961243 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
8 Hb_001102_090 0.1223786032 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
9 Hb_011381_070 0.125400944 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
10 Hb_014361_170 0.1273070199 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
11 Hb_002411_160 0.1289369794 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
12 Hb_001021_100 0.129739908 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
13 Hb_132840_020 0.1328508924 - - PREDICTED: protein LHY [Jatropha curcas]
14 Hb_002014_050 0.1343674808 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
15 Hb_005394_010 0.1358897949 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
16 Hb_000366_050 0.1362397238 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
17 Hb_000329_790 0.1364444622 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
18 Hb_000015_150 0.1366678367 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
19 Hb_002463_050 0.1371814729 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002518_200 0.1374148938 - - Proliferating cell nuclear antigen [Theobroma cacao]

Gene co-expression network

sample Hb_000111_390 Hb_000111_390 Hb_011671_110 Hb_011671_110 Hb_000111_390--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_000111_390--Hb_086639_050 Hb_001627_010 Hb_001627_010 Hb_000111_390--Hb_001627_010 Hb_047442_010 Hb_047442_010 Hb_000111_390--Hb_047442_010 Hb_002249_170 Hb_002249_170 Hb_000111_390--Hb_002249_170 Hb_001318_150 Hb_001318_150 Hb_000111_390--Hb_001318_150 Hb_001894_160 Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_002411_160 Hb_002411_160 Hb_086639_050--Hb_002411_160 Hb_080147_020 Hb_080147_020 Hb_086639_050--Hb_080147_020 Hb_001117_080 Hb_001117_080 Hb_086639_050--Hb_001117_080 Hb_086639_050--Hb_002249_170 Hb_000567_090 Hb_000567_090 Hb_086639_050--Hb_000567_090 Hb_002014_050 Hb_002014_050 Hb_001627_010--Hb_002014_050 Hb_007224_010 Hb_007224_010 Hb_001627_010--Hb_007224_010 Hb_132840_020 Hb_132840_020 Hb_001627_010--Hb_132840_020 Hb_001294_050 Hb_001294_050 Hb_001627_010--Hb_001294_050 Hb_001519_060 Hb_001519_060 Hb_001627_010--Hb_001519_060 Hb_047442_010--Hb_011671_110 Hb_002965_070 Hb_002965_070 Hb_047442_010--Hb_002965_070 Hb_047442_010--Hb_005394_010 Hb_000317_190 Hb_000317_190 Hb_047442_010--Hb_000317_190 Hb_047442_010--Hb_001894_160 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_002249_170--Hb_011671_110 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_000272_110 Hb_000272_110 Hb_001318_150--Hb_000272_110 Hb_001085_300 Hb_001085_300 Hb_001318_150--Hb_001085_300 Hb_001318_150--Hb_086639_050 Hb_048476_040 Hb_048476_040 Hb_001318_150--Hb_048476_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3451 139.63 210.247 95.2342 13.3783 18.9742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8019 4.53868 9.2232 51.2229 46.2991

CAGE analysis