Hb_000111_400

Information

Type -
Description -
Location Contig111: 382688-383179
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19310g
description POPTRDRAFT_853113; hypothetical protein
nr
ID XP_002303945.1
description hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GX85
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19310g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03418: 377656-382226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_400 0.0 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
2 Hb_004163_020 0.2278559969 - - -
3 Hb_000349_190 0.2595355475 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
4 Hb_004116_120 0.2621365582 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
5 Hb_004129_080 0.2696009119 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
6 Hb_026527_040 0.2703747157 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001329_170 0.2743430337 - - Chlorophyll a-b binding protein, chloroplastic [Aegilops tauschii]
8 Hb_000111_440 0.2788782278 - - -
9 Hb_000975_140 0.2790703273 - - lactoylglutathione lyase family protein [Populus trichocarpa]
10 Hb_114292_010 0.2810666419 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003740_030 0.2824209716 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
12 Hb_001269_460 0.2827448338 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
13 Hb_000175_150 0.2855000065 desease resistance Gene Name: NB-ARC hypothetical protein B456_009G311700 [Gossypium raimondii]
14 Hb_000917_170 0.2862070313 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
15 Hb_007382_090 0.2875428527 - - protein binding protein, putative [Ricinus communis]
16 Hb_003540_020 0.2898279582 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007432_010 0.291153382 - - hypothetical protein B456_004G088300 [Gossypium raimondii]
18 Hb_011457_030 0.2936706348 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
19 Hb_000264_120 0.2968142103 - - Stem-specific protein TSJT1, putative [Ricinus communis]
20 Hb_007113_080 0.2994675331 - - PREDICTED: uncharacterized protein LOC105639553 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000111_400 Hb_000111_400 Hb_004163_020 Hb_004163_020 Hb_000111_400--Hb_004163_020 Hb_000349_190 Hb_000349_190 Hb_000111_400--Hb_000349_190 Hb_004116_120 Hb_004116_120 Hb_000111_400--Hb_004116_120 Hb_004129_080 Hb_004129_080 Hb_000111_400--Hb_004129_080 Hb_026527_040 Hb_026527_040 Hb_000111_400--Hb_026527_040 Hb_001329_170 Hb_001329_170 Hb_000111_400--Hb_001329_170 Hb_004163_020--Hb_000349_190 Hb_000042_040 Hb_000042_040 Hb_004163_020--Hb_000042_040 Hb_001246_050 Hb_001246_050 Hb_004163_020--Hb_001246_050 Hb_107429_010 Hb_107429_010 Hb_004163_020--Hb_107429_010 Hb_000175_150 Hb_000175_150 Hb_004163_020--Hb_000175_150 Hb_000349_190--Hb_004129_080 Hb_000264_120 Hb_000264_120 Hb_000349_190--Hb_000264_120 Hb_000975_140 Hb_000975_140 Hb_000349_190--Hb_000975_140 Hb_000349_190--Hb_001246_050 Hb_000349_190--Hb_000042_040 Hb_002045_190 Hb_002045_190 Hb_004116_120--Hb_002045_190 Hb_033594_040 Hb_033594_040 Hb_004116_120--Hb_033594_040 Hb_000563_440 Hb_000563_440 Hb_004116_120--Hb_000563_440 Hb_002307_020 Hb_002307_020 Hb_004116_120--Hb_002307_020 Hb_006275_060 Hb_006275_060 Hb_004116_120--Hb_006275_060 Hb_003399_100 Hb_003399_100 Hb_004116_120--Hb_003399_100 Hb_004129_080--Hb_000264_120 Hb_002639_170 Hb_002639_170 Hb_004129_080--Hb_002639_170 Hb_004586_310 Hb_004586_310 Hb_004129_080--Hb_004586_310 Hb_114292_010 Hb_114292_010 Hb_004129_080--Hb_114292_010 Hb_004129_080--Hb_000975_140 Hb_001421_050 Hb_001421_050 Hb_026527_040--Hb_001421_050 Hb_006925_090 Hb_006925_090 Hb_026527_040--Hb_006925_090 Hb_034904_010 Hb_034904_010 Hb_026527_040--Hb_034904_010 Hb_011972_010 Hb_011972_010 Hb_026527_040--Hb_011972_010 Hb_011505_010 Hb_011505_010 Hb_026527_040--Hb_011505_010 Hb_005048_110 Hb_005048_110 Hb_001329_170--Hb_005048_110 Hb_002321_040 Hb_002321_040 Hb_001329_170--Hb_002321_040 Hb_002397_060 Hb_002397_060 Hb_001329_170--Hb_002397_060 Hb_009620_090 Hb_009620_090 Hb_001329_170--Hb_009620_090 Hb_126648_010 Hb_126648_010 Hb_001329_170--Hb_126648_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117649 0.507477 6.13868 1.34467 0.174011 0.165126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 2.27389 0 0.0901667 0

CAGE analysis