Hb_000111_420

Information

Type -
Description -
Location Contig111: 385320-389109
Sequence    

Annotation

kegg
ID vvi:100252030
description pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like
nr
ID XP_011020443.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
swissprot
ID Q9C977
description Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=2 SV=1
trembl
ID D7TIQ9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g05090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03421: 385324-388583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_420 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
2 Hb_012035_050 0.0891860915 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
3 Hb_002188_120 0.0905089267 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
4 Hb_166222_010 0.0955360084 - - hypothetical protein POPTR_0017s08350g [Populus trichocarpa]
5 Hb_105123_010 0.0966565062 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
6 Hb_155159_030 0.0971665416 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
7 Hb_012098_080 0.1005236881 - - KOM, putative [Ricinus communis]
8 Hb_007317_140 0.1023745664 - - expressed protein, putative [Ricinus communis]
9 Hb_009558_030 0.1033415239 - - myb3r3, putative [Ricinus communis]
10 Hb_003333_060 0.1078309958 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
11 Hb_009658_020 0.1080218094 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
12 Hb_000373_280 0.1103815551 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
13 Hb_001959_210 0.111950313 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
14 Hb_001009_170 0.1153362731 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_003376_400 0.1153380663 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
16 Hb_003226_180 0.1153619279 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
17 Hb_007044_140 0.1188168164 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
18 Hb_002740_180 0.1200451129 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000205_100 0.1204815686 - - PREDICTED: exportin-4 [Jatropha curcas]
20 Hb_002271_030 0.1206980569 - - Vacuolar protein sorting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_420 Hb_000111_420 Hb_012035_050 Hb_012035_050 Hb_000111_420--Hb_012035_050 Hb_002188_120 Hb_002188_120 Hb_000111_420--Hb_002188_120 Hb_166222_010 Hb_166222_010 Hb_000111_420--Hb_166222_010 Hb_105123_010 Hb_105123_010 Hb_000111_420--Hb_105123_010 Hb_155159_030 Hb_155159_030 Hb_000111_420--Hb_155159_030 Hb_012098_080 Hb_012098_080 Hb_000111_420--Hb_012098_080 Hb_001579_220 Hb_001579_220 Hb_012035_050--Hb_001579_220 Hb_009558_030 Hb_009558_030 Hb_012035_050--Hb_009558_030 Hb_000170_070 Hb_000170_070 Hb_012035_050--Hb_000170_070 Hb_000329_470 Hb_000329_470 Hb_012035_050--Hb_000329_470 Hb_012035_050--Hb_155159_030 Hb_007922_020 Hb_007922_020 Hb_002188_120--Hb_007922_020 Hb_001546_060 Hb_001546_060 Hb_002188_120--Hb_001546_060 Hb_000631_080 Hb_000631_080 Hb_002188_120--Hb_000631_080 Hb_001369_750 Hb_001369_750 Hb_002188_120--Hb_001369_750 Hb_009658_020 Hb_009658_020 Hb_002188_120--Hb_009658_020 Hb_002271_030 Hb_002271_030 Hb_166222_010--Hb_002271_030 Hb_003226_180 Hb_003226_180 Hb_166222_010--Hb_003226_180 Hb_003376_400 Hb_003376_400 Hb_166222_010--Hb_003376_400 Hb_166222_010--Hb_012098_080 Hb_000032_280 Hb_000032_280 Hb_166222_010--Hb_000032_280 Hb_105123_010--Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_105123_010--Hb_127552_030 Hb_105123_010--Hb_012098_080 Hb_032258_030 Hb_032258_030 Hb_105123_010--Hb_032258_030 Hb_000861_020 Hb_000861_020 Hb_105123_010--Hb_000861_020 Hb_022693_060 Hb_022693_060 Hb_105123_010--Hb_022693_060 Hb_155159_030--Hb_127552_030 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_155159_030--Hb_032258_030 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_155159_030--Hb_001579_220 Hb_012098_080--Hb_155159_030 Hb_002496_010 Hb_002496_010 Hb_012098_080--Hb_002496_010 Hb_001301_100 Hb_001301_100 Hb_012098_080--Hb_001301_100 Hb_000922_410 Hb_000922_410 Hb_012098_080--Hb_000922_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.14552 5.25107 2.58071 6.24338 13.4984 16.8261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8095 11.3191 9.90158 13.3679 14.0995

CAGE analysis