Hb_000112_050

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig112: 207347-209193
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06580g
description POPTRDRAFT_178438; hypothetical protein
nr
ID XP_012068677.1
description PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067KZW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03624: 207582-209485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000112_050 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
2 Hb_001114_120 0.0864410358 - - protein with unknown function [Ricinus communis]
3 Hb_003847_050 0.1023649408 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
4 Hb_001568_010 0.1092638148 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000203_080 0.1100160198 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
6 Hb_001040_200 0.1118916503 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
7 Hb_002448_020 0.1124579097 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_002307_010 0.1166250376 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
9 Hb_006846_030 0.1170623676 - - respiratory burst oxidase A [Manihot esculenta]
10 Hb_000393_030 0.1171284548 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_002475_030 0.1174238734 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001514_070 0.120618601 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001329_110 0.1211518949 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
14 Hb_188281_050 0.1222828627 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
15 Hb_003847_170 0.1227918167 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
16 Hb_029510_090 0.1230691345 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
17 Hb_002333_010 0.1255566457 - - hypothetical protein JCGZ_18834 [Jatropha curcas]
18 Hb_000594_160 0.1271728185 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
19 Hb_007386_030 0.129170697 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
20 Hb_003085_080 0.1304738298 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000112_050 Hb_000112_050 Hb_001114_120 Hb_001114_120 Hb_000112_050--Hb_001114_120 Hb_003847_050 Hb_003847_050 Hb_000112_050--Hb_003847_050 Hb_001568_010 Hb_001568_010 Hb_000112_050--Hb_001568_010 Hb_000203_080 Hb_000203_080 Hb_000112_050--Hb_000203_080 Hb_001040_200 Hb_001040_200 Hb_000112_050--Hb_001040_200 Hb_002448_020 Hb_002448_020 Hb_000112_050--Hb_002448_020 Hb_002307_010 Hb_002307_010 Hb_001114_120--Hb_002307_010 Hb_001114_120--Hb_000203_080 Hb_001114_120--Hb_003847_050 Hb_001114_120--Hb_002448_020 Hb_007386_030 Hb_007386_030 Hb_001114_120--Hb_007386_030 Hb_023956_010 Hb_023956_010 Hb_003847_050--Hb_023956_010 Hb_006846_030 Hb_006846_030 Hb_003847_050--Hb_006846_030 Hb_003847_050--Hb_001568_010 Hb_012787_050 Hb_012787_050 Hb_003847_050--Hb_012787_050 Hb_019026_050 Hb_019026_050 Hb_003847_050--Hb_019026_050 Hb_003847_050--Hb_002448_020 Hb_001568_010--Hb_006846_030 Hb_004282_010 Hb_004282_010 Hb_001568_010--Hb_004282_010 Hb_008727_040 Hb_008727_040 Hb_001568_010--Hb_008727_040 Hb_001568_010--Hb_012787_050 Hb_000014_080 Hb_000014_080 Hb_001568_010--Hb_000014_080 Hb_000840_050 Hb_000840_050 Hb_000203_080--Hb_000840_050 Hb_003842_010 Hb_003842_010 Hb_000203_080--Hb_003842_010 Hb_001329_110 Hb_001329_110 Hb_000203_080--Hb_001329_110 Hb_002622_010 Hb_002622_010 Hb_000203_080--Hb_002622_010 Hb_175758_010 Hb_175758_010 Hb_000203_080--Hb_175758_010 Hb_000594_160 Hb_000594_160 Hb_001040_200--Hb_000594_160 Hb_022250_160 Hb_022250_160 Hb_001040_200--Hb_022250_160 Hb_001040_200--Hb_007386_030 Hb_001040_200--Hb_004282_010 Hb_004079_100 Hb_004079_100 Hb_001040_200--Hb_004079_100 Hb_001040_200--Hb_002448_020 Hb_002448_020--Hb_006846_030 Hb_065521_010 Hb_065521_010 Hb_002448_020--Hb_065521_010 Hb_002448_020--Hb_007386_030 Hb_007875_020 Hb_007875_020 Hb_002448_020--Hb_007875_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101989 2.33621 2.35974 5.36419 0.0163683 0.0286798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.54961 3.1058

CAGE analysis