Hb_000112_080

Information

Type -
Description -
Location Contig112: 229237-234232
Sequence    

Annotation

kegg
ID rcu:RCOM_0919910
description glutamate receptor 2 plant, putative
nr
ID XP_011044971.1
description PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
swissprot
ID Q8LGN0
description Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3
trembl
ID B9RNQ8
description Glutamate receptor OS=Ricinus communis GN=RCOM_0919910 PE=3 SV=1
Gene Ontology
ID GO:0016020
description glutamate receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03628: 229918-230315 , PASA_asmbl_03629: 230676-231206 , PASA_asmbl_03630: 231248-231546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000112_080 0.0 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
2 Hb_001396_030 0.0596722381 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
3 Hb_005181_170 0.0623437625 - - PREDICTED: aldehyde dehydrogenase 22A1 [Jatropha curcas]
4 Hb_007218_040 0.0772908589 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
5 Hb_015048_020 0.0816625074 - - PREDICTED: myb-like protein D [Jatropha curcas]
6 Hb_001140_300 0.0921543881 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
7 Hb_000003_750 0.0922257331 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
8 Hb_085962_010 0.0949805835 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
9 Hb_001157_050 0.0954852319 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
10 Hb_011918_070 0.1012695863 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_001366_290 0.1020131667 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
12 Hb_007290_050 0.1021564233 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
13 Hb_001056_040 0.1035349223 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
14 Hb_009767_060 0.1057296974 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
15 Hb_003750_120 0.1057500109 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
16 Hb_000418_110 0.1062091054 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
17 Hb_025787_020 0.1067695216 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
18 Hb_168918_010 0.1074078721 - - pectin acetylesterase, putative [Ricinus communis]
19 Hb_005542_120 0.1081495824 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
20 Hb_002045_010 0.1096812462 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000112_080 Hb_000112_080 Hb_001396_030 Hb_001396_030 Hb_000112_080--Hb_001396_030 Hb_005181_170 Hb_005181_170 Hb_000112_080--Hb_005181_170 Hb_007218_040 Hb_007218_040 Hb_000112_080--Hb_007218_040 Hb_015048_020 Hb_015048_020 Hb_000112_080--Hb_015048_020 Hb_001140_300 Hb_001140_300 Hb_000112_080--Hb_001140_300 Hb_000003_750 Hb_000003_750 Hb_000112_080--Hb_000003_750 Hb_085962_010 Hb_085962_010 Hb_001396_030--Hb_085962_010 Hb_027506_030 Hb_027506_030 Hb_001396_030--Hb_027506_030 Hb_001396_030--Hb_007218_040 Hb_000303_060 Hb_000303_060 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_005181_170--Hb_007218_040 Hb_000297_210 Hb_000297_210 Hb_005181_170--Hb_000297_210 Hb_005181_170--Hb_001140_300 Hb_004122_010 Hb_004122_010 Hb_005181_170--Hb_004122_010 Hb_005181_170--Hb_001396_030 Hb_007218_040--Hb_001140_300 Hb_168918_010 Hb_168918_010 Hb_007218_040--Hb_168918_010 Hb_007811_020 Hb_007811_020 Hb_007218_040--Hb_007811_020 Hb_004435_020 Hb_004435_020 Hb_007218_040--Hb_004435_020 Hb_001157_050 Hb_001157_050 Hb_015048_020--Hb_001157_050 Hb_000032_420 Hb_000032_420 Hb_015048_020--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_015048_020--Hb_010449_010 Hb_001117_050 Hb_001117_050 Hb_015048_020--Hb_001117_050 Hb_015048_020--Hb_000003_750 Hb_025787_020 Hb_025787_020 Hb_001140_300--Hb_025787_020 Hb_001056_040 Hb_001056_040 Hb_001140_300--Hb_001056_040 Hb_007632_070 Hb_007632_070 Hb_001140_300--Hb_007632_070 Hb_001140_300--Hb_001396_030 Hb_011918_070 Hb_011918_070 Hb_000003_750--Hb_011918_070 Hb_000003_750--Hb_001157_050 Hb_003750_120 Hb_003750_120 Hb_000003_750--Hb_003750_120 Hb_005496_040 Hb_005496_040 Hb_000003_750--Hb_005496_040 Hb_070498_010 Hb_070498_010 Hb_000003_750--Hb_070498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.234347 2.10549 2.73463 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.425089 1.06893

CAGE analysis