Hb_000115_020

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig115: 13696-15793
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11930g
description POPTRDRAFT_419707; hypothetical protein
nr
ID XP_002311458.2
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q8LG76
description Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2
trembl
ID A9PFG3
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0008s11930g PE=2 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04515: 13863-14139 , PASA_asmbl_04516: 14275-15524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_020 0.0 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
2 Hb_005649_060 0.053568076 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
3 Hb_000937_010 0.0557521792 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000809_190 0.0797034908 - - PREDICTED: myosin-6-like [Jatropha curcas]
5 Hb_000445_270 0.0817868786 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004712_220 0.0822765492 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001751_050 0.0832807421 - - PREDICTED: phytol kinase 1, chloroplastic [Jatropha curcas]
8 Hb_001006_150 0.0859826093 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_006665_020 0.0876259058 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
10 Hb_002871_180 0.0890714588 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
11 Hb_001766_160 0.0909961632 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
12 Hb_020805_050 0.0911427785 - - PREDICTED: MLO-like protein 9 [Jatropha curcas]
13 Hb_007101_120 0.0913911983 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
14 Hb_001864_050 0.0915485217 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
15 Hb_005618_030 0.091573899 - - PREDICTED: cytochrome P450 734A1-like [Jatropha curcas]
16 Hb_000531_100 0.0917914073 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
17 Hb_000625_080 0.0925820598 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
18 Hb_000510_180 0.0936204182 - - unknown [Lotus japonicus]
19 Hb_002093_020 0.0936812837 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
20 Hb_005276_080 0.094563223 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000115_020 Hb_000115_020 Hb_005649_060 Hb_005649_060 Hb_000115_020--Hb_005649_060 Hb_000937_010 Hb_000937_010 Hb_000115_020--Hb_000937_010 Hb_000809_190 Hb_000809_190 Hb_000115_020--Hb_000809_190 Hb_000445_270 Hb_000445_270 Hb_000115_020--Hb_000445_270 Hb_004712_220 Hb_004712_220 Hb_000115_020--Hb_004712_220 Hb_001751_050 Hb_001751_050 Hb_000115_020--Hb_001751_050 Hb_002871_180 Hb_002871_180 Hb_005649_060--Hb_002871_180 Hb_001766_160 Hb_001766_160 Hb_005649_060--Hb_001766_160 Hb_005649_060--Hb_004712_220 Hb_005649_060--Hb_000445_270 Hb_001006_150 Hb_001006_150 Hb_005649_060--Hb_001006_150 Hb_005618_030 Hb_005618_030 Hb_000937_010--Hb_005618_030 Hb_000625_080 Hb_000625_080 Hb_000937_010--Hb_000625_080 Hb_008013_020 Hb_008013_020 Hb_000937_010--Hb_008013_020 Hb_006573_110 Hb_006573_110 Hb_000937_010--Hb_006573_110 Hb_007101_120 Hb_007101_120 Hb_000937_010--Hb_007101_120 Hb_000809_190--Hb_000445_270 Hb_101133_030 Hb_101133_030 Hb_000809_190--Hb_101133_030 Hb_000340_280 Hb_000340_280 Hb_000809_190--Hb_000340_280 Hb_001864_050 Hb_001864_050 Hb_000809_190--Hb_001864_050 Hb_000749_140 Hb_000749_140 Hb_000809_190--Hb_000749_140 Hb_000445_270--Hb_001006_150 Hb_080922_010 Hb_080922_010 Hb_000445_270--Hb_080922_010 Hb_000359_050 Hb_000359_050 Hb_000445_270--Hb_000359_050 Hb_005329_010 Hb_005329_010 Hb_000445_270--Hb_005329_010 Hb_000445_270--Hb_001864_050 Hb_004712_220--Hb_001006_150 Hb_004712_220--Hb_001766_160 Hb_002529_120 Hb_002529_120 Hb_004712_220--Hb_002529_120 Hb_013726_060 Hb_013726_060 Hb_004712_220--Hb_013726_060 Hb_000531_100 Hb_000531_100 Hb_004712_220--Hb_000531_100 Hb_002093_020 Hb_002093_020 Hb_001751_050--Hb_002093_020 Hb_001751_050--Hb_000531_100 Hb_001751_050--Hb_013726_060 Hb_005276_080 Hb_005276_080 Hb_001751_050--Hb_005276_080 Hb_001751_050--Hb_001766_160 Hb_000008_160 Hb_000008_160 Hb_001751_050--Hb_000008_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.00894 42.9855 5.37629 0 0.0174193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0177969 0 0.290302 52.0886

CAGE analysis