Hb_000115_060

Information

Type -
Description -
Location Contig115: 55792-60326
Sequence    

Annotation

kegg
ID pmum:103341483
description uncharacterized LOC103341483
nr
ID XP_008243230.1
description PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5XF15
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011926mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04519: 55799-60309 , PASA_asmbl_04520: 56254-56830
cDNA
(Sanger)
(ID:Location)		 035_I12.ab1: 55863-60309

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_060 0.0 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
2 Hb_010710_030 0.0649581525 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
3 Hb_008066_010 0.0859551321 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
4 Hb_002681_110 0.0879863659 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
5 Hb_000840_210 0.0942213335 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
6 Hb_001329_300 0.0985942542 - - PREDICTED: L-cysteine desulfhydrase [Jatropha curcas]
7 Hb_183086_060 0.0990077447 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
8 Hb_001248_130 0.102324164 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
9 Hb_001051_100 0.1028335783 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
10 Hb_000029_020 0.103255166 - - Vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_000061_320 0.1039299316 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
12 Hb_000602_010 0.1051675323 - - PREDICTED: rhomboid-like protease 2 isoform X1 [Jatropha curcas]
13 Hb_002835_410 0.10669339 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
14 Hb_000029_030 0.1095027932 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
15 Hb_000110_160 0.1103607142 - - conserved hypothetical protein [Ricinus communis]
16 Hb_020178_070 0.113075816 - - Protein Z, putative [Ricinus communis]
17 Hb_002368_050 0.1138516889 - - conserved hypothetical protein [Ricinus communis]
18 Hb_071736_020 0.1152273028 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
19 Hb_000567_260 0.1156871676 - - BnaA09g41440D [Brassica napus]
20 Hb_001677_110 0.1158876125 - - Protein YIPF1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000115_060 Hb_000115_060 Hb_010710_030 Hb_010710_030 Hb_000115_060--Hb_010710_030 Hb_008066_010 Hb_008066_010 Hb_000115_060--Hb_008066_010 Hb_002681_110 Hb_002681_110 Hb_000115_060--Hb_002681_110 Hb_000840_210 Hb_000840_210 Hb_000115_060--Hb_000840_210 Hb_001329_300 Hb_001329_300 Hb_000115_060--Hb_001329_300 Hb_183086_060 Hb_183086_060 Hb_000115_060--Hb_183086_060 Hb_010710_030--Hb_008066_010 Hb_004223_130 Hb_004223_130 Hb_010710_030--Hb_004223_130 Hb_010710_030--Hb_002681_110 Hb_000696_110 Hb_000696_110 Hb_010710_030--Hb_000696_110 Hb_001671_080 Hb_001671_080 Hb_010710_030--Hb_001671_080 Hb_000110_160 Hb_000110_160 Hb_008066_010--Hb_000110_160 Hb_008066_010--Hb_001329_300 Hb_000069_460 Hb_000069_460 Hb_008066_010--Hb_000069_460 Hb_000221_270 Hb_000221_270 Hb_008066_010--Hb_000221_270 Hb_000567_260 Hb_000567_260 Hb_008066_010--Hb_000567_260 Hb_000029_030 Hb_000029_030 Hb_002681_110--Hb_000029_030 Hb_157022_020 Hb_157022_020 Hb_002681_110--Hb_157022_020 Hb_071736_020 Hb_071736_020 Hb_002681_110--Hb_071736_020 Hb_000317_030 Hb_000317_030 Hb_002681_110--Hb_000317_030 Hb_007919_050 Hb_007919_050 Hb_002681_110--Hb_007919_050 Hb_002411_200 Hb_002411_200 Hb_000840_210--Hb_002411_200 Hb_020178_070 Hb_020178_070 Hb_000840_210--Hb_020178_070 Hb_000840_210--Hb_001329_300 Hb_000840_210--Hb_183086_060 Hb_000840_210--Hb_071736_020 Hb_001248_130 Hb_001248_130 Hb_000840_210--Hb_001248_130 Hb_001329_300--Hb_000110_160 Hb_001329_300--Hb_000567_260 Hb_002006_090 Hb_002006_090 Hb_001329_300--Hb_002006_090 Hb_000614_230 Hb_000614_230 Hb_001329_300--Hb_000614_230 Hb_008695_210 Hb_008695_210 Hb_001329_300--Hb_008695_210 Hb_004109_190 Hb_004109_190 Hb_183086_060--Hb_004109_190 Hb_004724_420 Hb_004724_420 Hb_183086_060--Hb_004724_420 Hb_000029_020 Hb_000029_020 Hb_183086_060--Hb_000029_020 Hb_002687_110 Hb_002687_110 Hb_183086_060--Hb_002687_110 Hb_183086_060--Hb_001248_130 Hb_000205_270 Hb_000205_270 Hb_183086_060--Hb_000205_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.0048 18.3285 21.3032 38.9679 99.0045 114.493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.751 74.6998 178.014 62.7785 23.9644

CAGE analysis