Hb_000115_070

Information

Type -
Description -
Location Contig115: 62529-62903
Sequence    

Annotation

kegg
ID rcu:RCOM_0030010
description hypothetical protein
nr
ID XP_002531623.1
description hypothetical protein RCOM_0030010 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T054
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0030010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04521: 62197-63219
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_070 0.0 - - hypothetical protein RCOM_0030010 [Ricinus communis]
2 Hb_002783_020 0.2492740954 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
3 Hb_149838_010 0.2585135042 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
4 Hb_002596_030 0.2718929526 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
5 Hb_000260_140 0.2773755417 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
6 Hb_000028_640 0.2789891058 - - Auxin efflux carrier component, putative [Ricinus communis]
7 Hb_004176_060 0.2875792311 - - -
8 Hb_005534_030 0.2950751792 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
9 Hb_012181_010 0.301069461 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002686_330 0.3020449032 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
11 Hb_007007_010 0.3061210444 - - -
12 Hb_005529_030 0.3089069817 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
13 Hb_004542_020 0.3119499886 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
14 Hb_000613_040 0.3136889523 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011639_080 0.3141507745 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
16 Hb_002232_300 0.3141563809 - - Squalene monooxygenase, putative [Ricinus communis]
17 Hb_009913_020 0.3144550585 - - conserved hypothetical protein [Ricinus communis]
18 Hb_019516_030 0.3151605471 - - Calcyclin-binding protein, putative [Ricinus communis]
19 Hb_048141_030 0.3158276242 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
20 Hb_054865_060 0.3172527542 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000115_070 Hb_000115_070 Hb_002783_020 Hb_002783_020 Hb_000115_070--Hb_002783_020 Hb_149838_010 Hb_149838_010 Hb_000115_070--Hb_149838_010 Hb_002596_030 Hb_002596_030 Hb_000115_070--Hb_002596_030 Hb_000260_140 Hb_000260_140 Hb_000115_070--Hb_000260_140 Hb_000028_640 Hb_000028_640 Hb_000115_070--Hb_000028_640 Hb_004176_060 Hb_004176_060 Hb_000115_070--Hb_004176_060 Hb_002783_020--Hb_149838_010 Hb_002783_020--Hb_000260_140 Hb_027402_090 Hb_027402_090 Hb_002783_020--Hb_027402_090 Hb_002708_020 Hb_002708_020 Hb_002783_020--Hb_002708_020 Hb_002686_330 Hb_002686_330 Hb_002783_020--Hb_002686_330 Hb_002783_020--Hb_004176_060 Hb_149838_010--Hb_000260_140 Hb_149838_010--Hb_027402_090 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_149838_010--Hb_002686_330 Hb_002701_120 Hb_002701_120 Hb_002596_030--Hb_002701_120 Hb_000390_310 Hb_000390_310 Hb_002596_030--Hb_000390_310 Hb_005276_130 Hb_005276_130 Hb_002596_030--Hb_005276_130 Hb_005527_010 Hb_005527_010 Hb_002596_030--Hb_005527_010 Hb_000175_590 Hb_000175_590 Hb_002596_030--Hb_000175_590 Hb_000694_030 Hb_000694_030 Hb_002596_030--Hb_000694_030 Hb_005527_080 Hb_005527_080 Hb_000260_140--Hb_005527_080 Hb_000260_140--Hb_002708_020 Hb_000260_140--Hb_004176_060 Hb_000160_150 Hb_000160_150 Hb_000260_140--Hb_000160_150 Hb_009913_020 Hb_009913_020 Hb_000028_640--Hb_009913_020 Hb_000258_020 Hb_000258_020 Hb_000028_640--Hb_000258_020 Hb_005460_030 Hb_005460_030 Hb_000028_640--Hb_005460_030 Hb_002217_130 Hb_002217_130 Hb_000028_640--Hb_002217_130 Hb_000161_100 Hb_000161_100 Hb_000028_640--Hb_000161_100 Hb_001019_120 Hb_001019_120 Hb_000028_640--Hb_001019_120 Hb_004176_060--Hb_149838_010 Hb_004176_060--Hb_027402_090 Hb_008725_140 Hb_008725_140 Hb_004176_060--Hb_008725_140 Hb_004176_060--Hb_002596_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
106.206 5.31062 122.614 11.7731 247.563 55.1665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50562 1.4224 5.0138 1.62286 114.796

CAGE analysis