Hb_000115_170

Information

Type -
Description -
Location Contig115: 156676-157752
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12060g
description POPTRDRAFT_564538; hypothetical protein
nr
ID KDP29418.1
description hypothetical protein JCGZ_18339 [Jatropha curcas]
swissprot
ID Q5GHF7
description Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1
trembl
ID A0A067K2Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18339 PE=4 SV=1
Gene Ontology
ID GO:0008033
description adenylate isopentenyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_170 0.0 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
2 Hb_000227_420 0.1236336083 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
3 Hb_043629_020 0.1727838352 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
4 Hb_002232_200 0.2157036383 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
5 Hb_005116_020 0.220321573 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
6 Hb_007382_020 0.22099598 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
7 Hb_005730_080 0.2236699191 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
8 Hb_003462_010 0.2264423969 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_002983_100 0.2368648813 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
10 Hb_003992_260 0.23710192 - - PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
11 Hb_025194_030 0.2588730141 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
12 Hb_010603_030 0.2597340837 - - -
13 Hb_000005_040 0.2597386642 - - PREDICTED: histone H2B.2 [Jatropha curcas]
14 Hb_002890_190 0.2625762209 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
15 Hb_003320_030 0.263905221 - - conserved hypothetical protein [Ricinus communis]
16 Hb_168978_040 0.2655418162 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
17 Hb_116436_010 0.2686017908 - - PREDICTED: uncharacterized protein LOC105766967 [Gossypium raimondii]
18 Hb_000206_130 0.2690248866 - - unnamed protein product [Vitis vinifera]
19 Hb_007127_010 0.2706032815 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
20 Hb_000345_120 0.2709550258 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]

Gene co-expression network

sample Hb_000115_170 Hb_000115_170 Hb_000227_420 Hb_000227_420 Hb_000115_170--Hb_000227_420 Hb_043629_020 Hb_043629_020 Hb_000115_170--Hb_043629_020 Hb_002232_200 Hb_002232_200 Hb_000115_170--Hb_002232_200 Hb_005116_020 Hb_005116_020 Hb_000115_170--Hb_005116_020 Hb_007382_020 Hb_007382_020 Hb_000115_170--Hb_007382_020 Hb_005730_080 Hb_005730_080 Hb_000115_170--Hb_005730_080 Hb_000227_420--Hb_043629_020 Hb_000227_420--Hb_002232_200 Hb_003992_260 Hb_003992_260 Hb_000227_420--Hb_003992_260 Hb_000227_420--Hb_007382_020 Hb_003462_010 Hb_003462_010 Hb_000227_420--Hb_003462_010 Hb_043629_020--Hb_003462_010 Hb_043629_020--Hb_003992_260 Hb_043629_020--Hb_005116_020 Hb_043629_020--Hb_002232_200 Hb_000005_040 Hb_000005_040 Hb_002232_200--Hb_000005_040 Hb_002900_060 Hb_002900_060 Hb_002232_200--Hb_002900_060 Hb_002232_200--Hb_005730_080 Hb_002022_050 Hb_002022_050 Hb_002232_200--Hb_002022_050 Hb_002260_190 Hb_002260_190 Hb_002232_200--Hb_002260_190 Hb_001142_020 Hb_001142_020 Hb_002232_200--Hb_001142_020 Hb_002983_100 Hb_002983_100 Hb_005116_020--Hb_002983_100 Hb_134732_010 Hb_134732_010 Hb_005116_020--Hb_134732_010 Hb_003320_030 Hb_003320_030 Hb_005116_020--Hb_003320_030 Hb_001159_210 Hb_001159_210 Hb_005116_020--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_005116_020--Hb_000038_150 Hb_029866_010 Hb_029866_010 Hb_005116_020--Hb_029866_010 Hb_025194_030 Hb_025194_030 Hb_007382_020--Hb_025194_030 Hb_004846_180 Hb_004846_180 Hb_007382_020--Hb_004846_180 Hb_008749_050 Hb_008749_050 Hb_007382_020--Hb_008749_050 Hb_184326_010 Hb_184326_010 Hb_007382_020--Hb_184326_010 Hb_168978_040 Hb_168978_040 Hb_007382_020--Hb_168978_040 Hb_007382_020--Hb_003992_260 Hb_005730_080--Hb_000005_040 Hb_005730_080--Hb_002900_060 Hb_005730_080--Hb_002260_190 Hb_005730_080--Hb_002022_050 Hb_002595_100 Hb_002595_100 Hb_005730_080--Hb_002595_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19206 0.785183 0.0941424 0.229509 21.2311 4.04465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.231208 0.909282 0.134516 0.992913 0.0747841

CAGE analysis