Hb_000115_220

Information

Type -
Description -
Location Contig115: 222758-226579
Sequence    

Annotation

kegg
ID rcu:RCOM_1309380
description hypothetical protein
nr
ID KDO38238.1
description hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067D625
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0379742mg PE=4 SV=1
Gene Ontology
ID GO:0004812
description cysteine--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04533: 222781-235471 , PASA_asmbl_04534: 226883-235387 , PASA_asmbl_04538: 225930-226438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_220 0.0 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
2 Hb_000527_060 0.0691779869 - - Protein C20orf11, putative [Ricinus communis]
3 Hb_000193_110 0.0731357311 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
4 Hb_010175_040 0.0838267002 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
5 Hb_000261_140 0.0838521165 - - -
6 Hb_000035_370 0.0842090578 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003992_270 0.0842579052 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
8 Hb_004157_040 0.0885986034 - - Rab2 [Hevea brasiliensis]
9 Hb_008071_020 0.0901970585 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
10 Hb_000805_240 0.0903099077 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
11 Hb_021068_040 0.0905765722 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
12 Hb_030736_080 0.0907159073 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004453_170 0.0910937066 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
14 Hb_000001_060 0.0912128274 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
15 Hb_001123_130 0.092172544 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
16 Hb_012286_030 0.0935460647 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
17 Hb_000457_180 0.093768765 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
18 Hb_001341_150 0.0953611619 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
19 Hb_026053_020 0.0956864705 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
20 Hb_000367_160 0.0971944478 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]

Gene co-expression network

sample Hb_000115_220 Hb_000115_220 Hb_000527_060 Hb_000527_060 Hb_000115_220--Hb_000527_060 Hb_000193_110 Hb_000193_110 Hb_000115_220--Hb_000193_110 Hb_010175_040 Hb_010175_040 Hb_000115_220--Hb_010175_040 Hb_000261_140 Hb_000261_140 Hb_000115_220--Hb_000261_140 Hb_000035_370 Hb_000035_370 Hb_000115_220--Hb_000035_370 Hb_003992_270 Hb_003992_270 Hb_000115_220--Hb_003992_270 Hb_012286_030 Hb_012286_030 Hb_000527_060--Hb_012286_030 Hb_001123_130 Hb_001123_130 Hb_000527_060--Hb_001123_130 Hb_000527_060--Hb_000261_140 Hb_004143_150 Hb_004143_150 Hb_000527_060--Hb_004143_150 Hb_000920_110 Hb_000920_110 Hb_000527_060--Hb_000920_110 Hb_000622_180 Hb_000622_180 Hb_000193_110--Hb_000622_180 Hb_011512_070 Hb_011512_070 Hb_000193_110--Hb_011512_070 Hb_000457_180 Hb_000457_180 Hb_000193_110--Hb_000457_180 Hb_012565_070 Hb_012565_070 Hb_000193_110--Hb_012565_070 Hb_021068_040 Hb_021068_040 Hb_000193_110--Hb_021068_040 Hb_010175_040--Hb_000261_140 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_001141_140 Hb_001141_140 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_000261_140--Hb_001123_130 Hb_000261_140--Hb_000920_110 Hb_001484_070 Hb_001484_070 Hb_000261_140--Hb_001484_070 Hb_000638_250 Hb_000638_250 Hb_000261_140--Hb_000638_250 Hb_000261_140--Hb_004143_150 Hb_001476_080 Hb_001476_080 Hb_000035_370--Hb_001476_080 Hb_000035_370--Hb_000920_110 Hb_002768_030 Hb_002768_030 Hb_000035_370--Hb_002768_030 Hb_000001_060 Hb_000001_060 Hb_000035_370--Hb_000001_060 Hb_006831_130 Hb_006831_130 Hb_000035_370--Hb_006831_130 Hb_026053_020 Hb_026053_020 Hb_000035_370--Hb_026053_020 Hb_000261_160 Hb_000261_160 Hb_003992_270--Hb_000261_160 Hb_003992_270--Hb_000527_060 Hb_008071_020 Hb_008071_020 Hb_003992_270--Hb_008071_020 Hb_002171_060 Hb_002171_060 Hb_003992_270--Hb_002171_060 Hb_003992_270--Hb_000457_180 Hb_001931_010 Hb_001931_010 Hb_003992_270--Hb_001931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1615 23.9487 35.2183 34.7879 24.2568 15.8987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.0699 78.3144 37.0944 16.3802 14.2571

CAGE analysis