Hb_000115_230

Information

Type -
Description -
Location Contig115: 227014-235655
Sequence    

Annotation

kegg
ID rcu:RCOM_0289620
description cysteinyl-tRNA synthetase, putative (EC:6.1.1.16)
nr
ID XP_012082122.1
description PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
swissprot
ID B8GNT5
description Cysteine--tRNA ligase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=cysS PE=3 SV=1
trembl
ID A0A067JUE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19596 PE=3 SV=1
Gene Ontology
ID GO:0004817
description cysteine--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04533: 222781-235471 , PASA_asmbl_04534: 226883-235387 , PASA_asmbl_04535: 234623-235545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_230 0.0 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
2 Hb_000239_030 0.0761479768 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
3 Hb_015807_100 0.0763246358 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
4 Hb_001172_120 0.0769655364 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
5 Hb_007192_100 0.0806643786 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
6 Hb_002374_390 0.0881578545 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
7 Hb_000392_380 0.0884088604 - - ubiquitin-conjugating enzyme [Medicago truncatula]
8 Hb_152910_020 0.0909990715 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
9 Hb_000881_080 0.0932164828 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000915_120 0.0934901892 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
11 Hb_000567_410 0.0936700704 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
12 Hb_006478_160 0.0956197002 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
13 Hb_001633_030 0.0963658566 - - -
14 Hb_003326_020 0.0970987508 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
15 Hb_120823_010 0.0976945714 - - -
16 Hb_003185_050 0.0979914099 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
17 Hb_002006_130 0.09878452 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
18 Hb_001314_040 0.098975764 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
19 Hb_000349_290 0.0990333852 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
20 Hb_007304_070 0.1000390338 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000115_230 Hb_000115_230 Hb_000239_030 Hb_000239_030 Hb_000115_230--Hb_000239_030 Hb_015807_100 Hb_015807_100 Hb_000115_230--Hb_015807_100 Hb_001172_120 Hb_001172_120 Hb_000115_230--Hb_001172_120 Hb_007192_100 Hb_007192_100 Hb_000115_230--Hb_007192_100 Hb_002374_390 Hb_002374_390 Hb_000115_230--Hb_002374_390 Hb_000392_380 Hb_000392_380 Hb_000115_230--Hb_000392_380 Hb_001157_010 Hb_001157_010 Hb_000239_030--Hb_001157_010 Hb_003326_020 Hb_003326_020 Hb_000239_030--Hb_003326_020 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000236_150 Hb_000236_150 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450 Hb_015807_100--Hb_007192_100 Hb_000450_130 Hb_000450_130 Hb_015807_100--Hb_000450_130 Hb_000349_290 Hb_000349_290 Hb_015807_100--Hb_000349_290 Hb_015807_100--Hb_001172_120 Hb_029904_030 Hb_029904_030 Hb_015807_100--Hb_029904_030 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_001172_120--Hb_007192_100 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_001235_110 Hb_001235_110 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_000181_300 Hb_000181_300 Hb_002374_390--Hb_000181_300 Hb_001016_090 Hb_001016_090 Hb_002374_390--Hb_001016_090 Hb_000364_030 Hb_000364_030 Hb_002374_390--Hb_000364_030 Hb_005731_170 Hb_005731_170 Hb_002374_390--Hb_005731_170 Hb_003185_050 Hb_003185_050 Hb_002374_390--Hb_003185_050 Hb_000905_180 Hb_000905_180 Hb_002374_390--Hb_000905_180 Hb_114310_080 Hb_114310_080 Hb_000392_380--Hb_114310_080 Hb_000019_070 Hb_000019_070 Hb_000392_380--Hb_000019_070 Hb_000392_380--Hb_001172_120 Hb_029388_030 Hb_029388_030 Hb_000392_380--Hb_029388_030 Hb_000392_380--Hb_007192_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.97226 10.509 9.7355 18.1553 10.2791 9.58172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7431 63.7009 34.391 13.7123 7.67069

CAGE analysis