Hb_000115_290

Information

Type -
Description -
Location Contig115: 314621-315409
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12150g
description POPTRDRAFT_564544; hypothetical protein
nr
ID XP_011022303.1
description PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HJ45
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s12150g PE=4 SV=2
Gene Ontology
ID GO:0004674
description copper-binding periplasmic protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_290 0.0 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
2 Hb_032260_130 0.0957432378 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
3 Hb_010417_090 0.097710469 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
4 Hb_116194_010 0.1047452727 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_000994_100 0.1234049495 - - RALFL33, putative [Ricinus communis]
6 Hb_002970_070 0.1250654674 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
7 Hb_002374_520 0.1262895609 - - early nodulin 8 precursor family protein [Populus trichocarpa]
8 Hb_002042_160 0.1311942385 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_135720_010 0.1395274415 - - hypothetical protein JCGZ_17857 [Jatropha curcas]
10 Hb_000856_250 0.1458489358 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_000070_070 0.1475884549 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
12 Hb_000036_060 0.152141178 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
13 Hb_055529_010 0.1531885386 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
14 Hb_000705_050 0.1574304574 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
15 Hb_164117_010 0.1581154011 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
16 Hb_003304_090 0.1582837333 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
17 Hb_004893_010 0.1594975978 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
18 Hb_002477_080 0.1631564433 - - hypothetical protein RCOM_0653450 [Ricinus communis]
19 Hb_085315_010 0.1651658505 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
20 Hb_029866_080 0.1653361373 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_290 Hb_000115_290 Hb_032260_130 Hb_032260_130 Hb_000115_290--Hb_032260_130 Hb_010417_090 Hb_010417_090 Hb_000115_290--Hb_010417_090 Hb_116194_010 Hb_116194_010 Hb_000115_290--Hb_116194_010 Hb_000994_100 Hb_000994_100 Hb_000115_290--Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_000115_290--Hb_002970_070 Hb_002374_520 Hb_002374_520 Hb_000115_290--Hb_002374_520 Hb_164117_010 Hb_164117_010 Hb_032260_130--Hb_164117_010 Hb_004893_010 Hb_004893_010 Hb_032260_130--Hb_004893_010 Hb_032260_130--Hb_116194_010 Hb_007632_130 Hb_007632_130 Hb_032260_130--Hb_007632_130 Hb_032260_130--Hb_002374_520 Hb_000070_070 Hb_000070_070 Hb_010417_090--Hb_000070_070 Hb_010417_090--Hb_002970_070 Hb_010417_090--Hb_000994_100 Hb_000856_250 Hb_000856_250 Hb_010417_090--Hb_000856_250 Hb_002236_010 Hb_002236_010 Hb_010417_090--Hb_002236_010 Hb_116194_010--Hb_164117_010 Hb_002042_160 Hb_002042_160 Hb_116194_010--Hb_002042_160 Hb_002814_050 Hb_002814_050 Hb_116194_010--Hb_002814_050 Hb_004785_090 Hb_004785_090 Hb_116194_010--Hb_004785_090 Hb_000994_100--Hb_002970_070 Hb_000994_100--Hb_002042_160 Hb_055529_010 Hb_055529_010 Hb_000994_100--Hb_055529_010 Hb_029260_010 Hb_029260_010 Hb_000994_100--Hb_029260_010 Hb_000347_420 Hb_000347_420 Hb_000994_100--Hb_000347_420 Hb_002970_070--Hb_002042_160 Hb_002970_070--Hb_055529_010 Hb_130967_010 Hb_130967_010 Hb_002970_070--Hb_130967_010 Hb_000020_030 Hb_000020_030 Hb_002970_070--Hb_000020_030 Hb_000899_060 Hb_000899_060 Hb_002374_520--Hb_000899_060 Hb_037684_010 Hb_037684_010 Hb_002374_520--Hb_037684_010 Hb_002598_020 Hb_002598_020 Hb_002374_520--Hb_002598_020 Hb_007237_080 Hb_007237_080 Hb_002374_520--Hb_007237_080 Hb_000453_290 Hb_000453_290 Hb_002374_520--Hb_000453_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.11382 0.274017 5.62463 0.0299951 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0540495 0 3.19561 1.62519

CAGE analysis