Hb_000115_330

Information

Type -
Description -
Location Contig115: 354136-364113
Sequence    

Annotation

kegg
ID rcu:RCOM_1309600
description altered response to gravity (arg1), plant, putative
nr
ID XP_002527001.1
description altered response to gravity (arg1), plant, putative [Ricinus communis]
swissprot
ID Q9ZSY2
description Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1
trembl
ID B9SLY2
description Altered response to gravity (Arg1), plant, putative OS=Ricinus communis GN=RCOM_1309600 PE=4 SV=1
Gene Ontology
ID GO:0008092
description chaperone protein dnaj 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04545: 354284-364096 , PASA_asmbl_04546: 360908-361091
cDNA
(Sanger)
(ID:Location)		 010_C23.ab1: 359379-364096 , 017_L17.ab1: 359069-364096 , 029_P21.ab1: 362542-364092

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_330 0.0 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
2 Hb_009486_130 0.0521353839 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
3 Hb_002477_070 0.0760603077 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
4 Hb_000029_020 0.0792480232 - - Vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_000205_270 0.0794377022 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
6 Hb_016065_010 0.0795766938 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
7 Hb_001811_020 0.0800805989 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004109_190 0.0833689551 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
9 Hb_002687_110 0.0850010046 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
10 Hb_002835_410 0.0852213291 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
11 Hb_004837_140 0.0886454415 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
12 Hb_008300_010 0.0890747994 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
13 Hb_002449_020 0.0892246025 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
14 Hb_009838_080 0.0904644603 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_000189_620 0.0904883857 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
16 Hb_001863_390 0.090655384 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
17 Hb_002716_070 0.0908351761 - - PREDICTED: protein ABIL2 [Jatropha curcas]
18 Hb_132835_010 0.0915699729 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
19 Hb_000009_160 0.0923321008 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
20 Hb_000230_540 0.0924906261 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]

Gene co-expression network

sample Hb_000115_330 Hb_000115_330 Hb_009486_130 Hb_009486_130 Hb_000115_330--Hb_009486_130 Hb_002477_070 Hb_002477_070 Hb_000115_330--Hb_002477_070 Hb_000029_020 Hb_000029_020 Hb_000115_330--Hb_000029_020 Hb_000205_270 Hb_000205_270 Hb_000115_330--Hb_000205_270 Hb_016065_010 Hb_016065_010 Hb_000115_330--Hb_016065_010 Hb_001811_020 Hb_001811_020 Hb_000115_330--Hb_001811_020 Hb_009486_130--Hb_016065_010 Hb_000431_010 Hb_000431_010 Hb_009486_130--Hb_000431_010 Hb_008300_010 Hb_008300_010 Hb_009486_130--Hb_008300_010 Hb_009486_130--Hb_000205_270 Hb_005488_010 Hb_005488_010 Hb_009486_130--Hb_005488_010 Hb_002214_040 Hb_002214_040 Hb_002477_070--Hb_002214_040 Hb_009838_080 Hb_009838_080 Hb_002477_070--Hb_009838_080 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_000529_190 Hb_000529_190 Hb_002477_070--Hb_000529_190 Hb_008648_010 Hb_008648_010 Hb_002477_070--Hb_008648_010 Hb_000059_370 Hb_000059_370 Hb_002477_070--Hb_000059_370 Hb_000029_020--Hb_001811_020 Hb_183086_060 Hb_183086_060 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_002687_110 Hb_002687_110 Hb_000029_020--Hb_002687_110 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_016065_010--Hb_005488_010 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_055062_030 Hb_055062_030 Hb_016065_010--Hb_055062_030 Hb_016065_010--Hb_000009_160 Hb_000099_200 Hb_000099_200 Hb_001811_020--Hb_000099_200 Hb_001811_020--Hb_000205_270 Hb_001258_080 Hb_001258_080 Hb_001811_020--Hb_001258_080 Hb_001811_020--Hb_183086_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.1508 7.11804 8.59055 12.8691 36.064 32.0136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.1051 42.5596 44.4506 18.0686 12.8035

CAGE analysis