Hb_000115_340

Information

Type -
Description -
Location Contig115: 366979-378952
Sequence    

Annotation

kegg
ID rcu:RCOM_1309840
description zinc finger protein, putative
nr
ID XP_012082125.1
description PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
swissprot
ID O14099
description Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=3 SV=1
trembl
ID A0A067KC71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18365 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04548: 367101-370980 , PASA_asmbl_04549: 371020-378654
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_340 0.0 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
2 Hb_001245_050 0.0748939762 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
3 Hb_003605_050 0.0859560954 - - protein with unknown function [Ricinus communis]
4 Hb_000866_450 0.0895247665 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_003181_040 0.0936808227 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
6 Hb_023226_070 0.0937770035 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001699_010 0.0967064707 - - drought-inducible protein [Manihot esculenta]
8 Hb_000120_030 0.0992152301 - - PREDICTED: uncharacterized protein LOC105630385 isoform X1 [Jatropha curcas]
9 Hb_000373_230 0.099769663 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
10 Hb_007017_070 0.1026165619 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
11 Hb_006452_180 0.1030230541 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
12 Hb_102438_030 0.1031764053 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
13 Hb_003682_030 0.1047901876 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
14 Hb_000130_420 0.1051996348 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
15 Hb_010998_040 0.1057039504 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
16 Hb_005834_040 0.1074023862 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
17 Hb_020141_040 0.1074508069 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
18 Hb_008695_090 0.107688253 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
19 Hb_000120_910 0.1085141482 - - plant ubiquilin, putative [Ricinus communis]
20 Hb_027654_020 0.1098539319 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]

Gene co-expression network

sample Hb_000115_340 Hb_000115_340 Hb_001245_050 Hb_001245_050 Hb_000115_340--Hb_001245_050 Hb_003605_050 Hb_003605_050 Hb_000115_340--Hb_003605_050 Hb_000866_450 Hb_000866_450 Hb_000115_340--Hb_000866_450 Hb_003181_040 Hb_003181_040 Hb_000115_340--Hb_003181_040 Hb_023226_070 Hb_023226_070 Hb_000115_340--Hb_023226_070 Hb_001699_010 Hb_001699_010 Hb_000115_340--Hb_001699_010 Hb_003777_110 Hb_003777_110 Hb_001245_050--Hb_003777_110 Hb_006452_180 Hb_006452_180 Hb_001245_050--Hb_006452_180 Hb_001245_050--Hb_000866_450 Hb_000375_290 Hb_000375_290 Hb_001245_050--Hb_000375_290 Hb_000120_030 Hb_000120_030 Hb_001245_050--Hb_000120_030 Hb_004943_030 Hb_004943_030 Hb_003605_050--Hb_004943_030 Hb_000227_270 Hb_000227_270 Hb_003605_050--Hb_000227_270 Hb_003605_050--Hb_023226_070 Hb_008165_030 Hb_008165_030 Hb_003605_050--Hb_008165_030 Hb_002903_140 Hb_002903_140 Hb_003605_050--Hb_002903_140 Hb_000809_160 Hb_000809_160 Hb_000866_450--Hb_000809_160 Hb_005288_140 Hb_005288_140 Hb_000866_450--Hb_005288_140 Hb_000094_090 Hb_000094_090 Hb_000866_450--Hb_000094_090 Hb_102438_030 Hb_102438_030 Hb_000866_450--Hb_102438_030 Hb_000723_110 Hb_000723_110 Hb_000866_450--Hb_000723_110 Hb_001856_220 Hb_001856_220 Hb_003181_040--Hb_001856_220 Hb_008937_010 Hb_008937_010 Hb_003181_040--Hb_008937_010 Hb_001258_020 Hb_001258_020 Hb_003181_040--Hb_001258_020 Hb_003398_080 Hb_003398_080 Hb_003181_040--Hb_003398_080 Hb_004553_030 Hb_004553_030 Hb_003181_040--Hb_004553_030 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_023226_070--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_000445_060 Hb_000445_060 Hb_023226_070--Hb_000445_060 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_000089_210 Hb_000089_210 Hb_001699_010--Hb_000089_210 Hb_010287_020 Hb_010287_020 Hb_001699_010--Hb_010287_020 Hb_004994_240 Hb_004994_240 Hb_001699_010--Hb_004994_240 Hb_000120_910 Hb_000120_910 Hb_001699_010--Hb_000120_910 Hb_001699_010--Hb_000120_030 Hb_000110_350 Hb_000110_350 Hb_001699_010--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.70005 16.835 15.9062 10.2462 9.38416 7.38536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65876 4.70202 6.77479 4.45618 6.19734

CAGE analysis