Hb_000116_020

Information

Type -
Description -
Location Contig116: 14393-18572
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10270g
description POPTRDRAFT_818359; SERINE ACETYLTRANSFERASE-106 family protein
nr
ID XP_012065368.1
description PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q8W2B8
description Serine acetyltransferase 4 OS=Arabidopsis thaliana GN=SAT4 PE=1 SV=1
trembl
ID A0A067L970
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22375 PE=4 SV=1
Gene Ontology
ID GO:0005737
description serine acetyltransferase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04802: 14577-18514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_020 0.0 - - PREDICTED: serine acetyltransferase 2-like isoform X1 [Jatropha curcas]
2 Hb_003602_060 0.1457532072 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
3 Hb_032568_010 0.1476945292 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]
4 Hb_001863_070 0.1484871945 - - Queuine tRNA-ribosyltransferase [Theobroma cacao]
5 Hb_006153_150 0.1529439253 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
6 Hb_002890_300 0.1530291703 - - abhydrolase domain containing, putative [Ricinus communis]
7 Hb_001329_070 0.1542029543 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
8 Hb_000235_070 0.1610073209 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
9 Hb_013405_070 0.1616226764 - - ferric-chelate reductase, putative [Ricinus communis]
10 Hb_000069_360 0.1623830405 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000011_560 0.1649762493 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
12 Hb_001322_230 0.1669950529 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
13 Hb_001587_040 0.167463096 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
14 Hb_002759_120 0.1682627621 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002027_440 0.1689172991 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005000_080 0.1690292506 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
17 Hb_005784_030 0.1699772042 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
18 Hb_004545_120 0.170352322 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
19 Hb_000676_020 0.1710530073 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
20 Hb_000327_200 0.1719094017 - - glutathione-s-transferase omega, putative [Ricinus communis]

Gene co-expression network

sample Hb_000116_020 Hb_000116_020 Hb_003602_060 Hb_003602_060 Hb_000116_020--Hb_003602_060 Hb_032568_010 Hb_032568_010 Hb_000116_020--Hb_032568_010 Hb_001863_070 Hb_001863_070 Hb_000116_020--Hb_001863_070 Hb_006153_150 Hb_006153_150 Hb_000116_020--Hb_006153_150 Hb_002890_300 Hb_002890_300 Hb_000116_020--Hb_002890_300 Hb_001329_070 Hb_001329_070 Hb_000116_020--Hb_001329_070 Hb_154038_020 Hb_154038_020 Hb_003602_060--Hb_154038_020 Hb_093458_010 Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_032568_010--Hb_002890_300 Hb_002391_320 Hb_002391_320 Hb_032568_010--Hb_002391_320 Hb_005488_130 Hb_005488_130 Hb_032568_010--Hb_005488_130 Hb_007101_260 Hb_007101_260 Hb_032568_010--Hb_007101_260 Hb_000753_110 Hb_000753_110 Hb_032568_010--Hb_000753_110 Hb_011242_050 Hb_011242_050 Hb_001863_070--Hb_011242_050 Hb_002027_440 Hb_002027_440 Hb_001863_070--Hb_002027_440 Hb_000800_020 Hb_000800_020 Hb_001863_070--Hb_000800_020 Hb_013405_070 Hb_013405_070 Hb_001863_070--Hb_013405_070 Hb_001322_230 Hb_001322_230 Hb_001863_070--Hb_001322_230 Hb_000749_260 Hb_000749_260 Hb_006153_150--Hb_000749_260 Hb_000390_210 Hb_000390_210 Hb_006153_150--Hb_000390_210 Hb_147378_010 Hb_147378_010 Hb_006153_150--Hb_147378_010 Hb_002701_070 Hb_002701_070 Hb_006153_150--Hb_002701_070 Hb_001544_050 Hb_001544_050 Hb_006153_150--Hb_001544_050 Hb_005784_030 Hb_005784_030 Hb_006153_150--Hb_005784_030 Hb_008179_030 Hb_008179_030 Hb_002890_300--Hb_008179_030 Hb_000011_560 Hb_000011_560 Hb_002890_300--Hb_000011_560 Hb_002890_300--Hb_006153_150 Hb_000483_100 Hb_000483_100 Hb_002890_300--Hb_000483_100 Hb_000206_230 Hb_000206_230 Hb_001329_070--Hb_000206_230 Hb_002016_140 Hb_002016_140 Hb_001329_070--Hb_002016_140 Hb_001329_070--Hb_002027_440 Hb_001329_070--Hb_011242_050 Hb_001329_070--Hb_013405_070 Hb_001329_070--Hb_003602_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.810886 4.31872 18.289 12.5782 0.354247 1.34224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58659 7.83194 4.87485 2.17847 13.3145

CAGE analysis