Hb_000116_050

Information

Type -
Description -
Location Contig116: 37641-40559
Sequence    

Annotation

kegg
ID rcu:RCOM_0873690
description cyclin B, putative
nr
ID XP_012065375.1
description PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
swissprot
ID P46277
description G2/mitotic-specific cyclin-1 OS=Medicago sativa subsp. varia PE=2 SV=1
trembl
ID A0A067L5M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22378 PE=3 SV=1
Gene Ontology
ID GO:0005634
description g2 mitotic-specific cyclin-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04810: 37546-40488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_050 0.0 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
2 Hb_000060_030 0.0356346269 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
3 Hb_012395_040 0.048208122 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001279_110 0.0485608683 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
5 Hb_009113_060 0.0486746137 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001998_180 0.0586358471 - - actin binding protein, putative [Ricinus communis]
7 Hb_002928_150 0.0672775201 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
8 Hb_003776_050 0.0714095323 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
9 Hb_005288_090 0.0746472736 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
10 Hb_181744_010 0.0751018173 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_007245_030 0.0759964959 - - conserved hypothetical protein [Ricinus communis]
12 Hb_080952_060 0.0762512923 - - PREDICTED: patellin-4 [Populus euphratica]
13 Hb_000480_060 0.0787041437 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
14 Hb_001541_140 0.0803987892 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
15 Hb_016898_020 0.0806902422 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
16 Hb_119044_040 0.0814801028 - - cyclin B, putative [Ricinus communis]
17 Hb_003368_070 0.0827229758 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
18 Hb_000340_550 0.0831289862 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
19 Hb_000085_360 0.0833957836 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
20 Hb_001969_120 0.0834685767 - - PREDICTED: plectin [Jatropha curcas]

Gene co-expression network

sample Hb_000116_050 Hb_000116_050 Hb_000060_030 Hb_000060_030 Hb_000116_050--Hb_000060_030 Hb_012395_040 Hb_012395_040 Hb_000116_050--Hb_012395_040 Hb_001279_110 Hb_001279_110 Hb_000116_050--Hb_001279_110 Hb_009113_060 Hb_009113_060 Hb_000116_050--Hb_009113_060 Hb_001998_180 Hb_001998_180 Hb_000116_050--Hb_001998_180 Hb_002928_150 Hb_002928_150 Hb_000116_050--Hb_002928_150 Hb_000060_030--Hb_001279_110 Hb_000060_030--Hb_001998_180 Hb_003776_050 Hb_003776_050 Hb_000060_030--Hb_003776_050 Hb_000060_030--Hb_002928_150 Hb_000060_030--Hb_012395_040 Hb_012395_040--Hb_001279_110 Hb_005618_070 Hb_005618_070 Hb_012395_040--Hb_005618_070 Hb_001257_070 Hb_001257_070 Hb_012395_040--Hb_001257_070 Hb_005288_090 Hb_005288_090 Hb_012395_040--Hb_005288_090 Hb_119044_040 Hb_119044_040 Hb_001279_110--Hb_119044_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_009113_060--Hb_012395_040 Hb_016898_020 Hb_016898_020 Hb_009113_060--Hb_016898_020 Hb_009113_060--Hb_001279_110 Hb_000480_060 Hb_000480_060 Hb_009113_060--Hb_000480_060 Hb_009113_060--Hb_000060_030 Hb_080952_060 Hb_080952_060 Hb_001998_180--Hb_080952_060 Hb_001998_180--Hb_001279_110 Hb_001998_180--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_001998_180--Hb_000085_360 Hb_003398_050 Hb_003398_050 Hb_002928_150--Hb_003398_050 Hb_002928_150--Hb_003776_050 Hb_005914_100 Hb_005914_100 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_002928_150--Hb_004174_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.176155 15.8757 7.99017 0.0134782 0.0117948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.03898 1.11026

CAGE analysis