Hb_000116_160

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig116: 144662-147800
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10400g
description POPTRDRAFT_760356; RWP-RK domain-containing family protein
nr
ID KDP43764.1
description hypothetical protein JCGZ_22391 [Jatropha curcas]
swissprot
ID O81791
description Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1
trembl
ID A0A067LHU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22391 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein rkd5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04824: 145805-147761
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_160 0.0 transcription factor TF Family: RWP-RK hypothetical protein JCGZ_22391 [Jatropha curcas]
2 Hb_000413_050 0.0697840584 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
3 Hb_005890_010 0.0733535137 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
4 Hb_008406_060 0.0809355872 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
5 Hb_005488_210 0.0918455523 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
6 Hb_000007_330 0.0925123145 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
7 Hb_001926_070 0.0999444913 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
8 Hb_029695_090 0.1031711976 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
9 Hb_006651_030 0.1053079385 - - unnamed protein product [Homo sapiens]
10 Hb_127629_010 0.1059463768 - - hypothetical protein CICLE_v10005216mg [Citrus clementina]
11 Hb_004117_380 0.108599596 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
12 Hb_011909_050 0.1098626476 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
13 Hb_007007_100 0.1214897176 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
14 Hb_001677_170 0.1228375685 - - hypothetical protein M569_03661, partial [Genlisea aurea]
15 Hb_008019_010 0.1235677815 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
16 Hb_001606_010 0.1241611604 - - kinase, putative [Ricinus communis]
17 Hb_032731_010 0.1248262494 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
18 Hb_002284_160 0.1260262911 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_003873_020 0.1273892574 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
20 Hb_001115_070 0.1277717024 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]

Gene co-expression network

sample Hb_000116_160 Hb_000116_160 Hb_000413_050 Hb_000413_050 Hb_000116_160--Hb_000413_050 Hb_005890_010 Hb_005890_010 Hb_000116_160--Hb_005890_010 Hb_008406_060 Hb_008406_060 Hb_000116_160--Hb_008406_060 Hb_005488_210 Hb_005488_210 Hb_000116_160--Hb_005488_210 Hb_000007_330 Hb_000007_330 Hb_000116_160--Hb_000007_330 Hb_001926_070 Hb_001926_070 Hb_000116_160--Hb_001926_070 Hb_029695_090 Hb_029695_090 Hb_000413_050--Hb_029695_090 Hb_000413_050--Hb_000007_330 Hb_000413_050--Hb_005488_210 Hb_127629_010 Hb_127629_010 Hb_000413_050--Hb_127629_010 Hb_000413_050--Hb_005890_010 Hb_005890_010--Hb_005488_210 Hb_005890_010--Hb_001926_070 Hb_004117_380 Hb_004117_380 Hb_005890_010--Hb_004117_380 Hb_000343_050 Hb_000343_050 Hb_005890_010--Hb_000343_050 Hb_032731_010 Hb_032731_010 Hb_005890_010--Hb_032731_010 Hb_161103_010 Hb_161103_010 Hb_008406_060--Hb_161103_010 Hb_011909_050 Hb_011909_050 Hb_008406_060--Hb_011909_050 Hb_006651_030 Hb_006651_030 Hb_008406_060--Hb_006651_030 Hb_008019_010 Hb_008019_010 Hb_008406_060--Hb_008019_010 Hb_018134_010 Hb_018134_010 Hb_008406_060--Hb_018134_010 Hb_005488_210--Hb_000007_330 Hb_007007_100 Hb_007007_100 Hb_005488_210--Hb_007007_100 Hb_000236_130 Hb_000236_130 Hb_005488_210--Hb_000236_130 Hb_004346_050 Hb_004346_050 Hb_005488_210--Hb_004346_050 Hb_000007_330--Hb_001926_070 Hb_000007_330--Hb_007007_100 Hb_000890_170 Hb_000890_170 Hb_000007_330--Hb_000890_170 Hb_000007_330--Hb_029695_090 Hb_001606_010 Hb_001606_010 Hb_001926_070--Hb_001606_010 Hb_001926_070--Hb_032731_010 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0379268 0.12418 0.077196 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0836962

CAGE analysis