Hb_000116_170

Information

Type -
Description -
Location Contig116: 149949-155693
Sequence    

Annotation

kegg
ID rcu:RCOM_0874210
description protein with unknown function
nr
ID KDP43765.1
description hypothetical protein JCGZ_22392 [Jatropha curcas]
swissprot
ID Q9V8W3
description Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1
trembl
ID A0A067LGU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22392 PE=4 SV=1
Gene Ontology
ID GO:0005968
description rab proteins geranylgeranyltransferase component a 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_170 0.0 - - hypothetical protein JCGZ_22392 [Jatropha curcas]
2 Hb_004608_020 0.0664896781 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
3 Hb_000631_150 0.0729095925 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
4 Hb_006922_080 0.0757345745 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
5 Hb_025557_020 0.0774676032 - - PREDICTED: activating signal cointegrator 1 [Jatropha curcas]
6 Hb_000849_100 0.0811031568 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
7 Hb_009118_010 0.0820857735 - - methionine aminopeptidase, putative [Ricinus communis]
8 Hb_002942_080 0.0824347955 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
9 Hb_004881_050 0.086980313 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
10 Hb_002675_060 0.0888981095 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
11 Hb_000335_010 0.0919128611 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_000424_230 0.0934001375 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Glycine max]
13 Hb_000457_060 0.0949569053 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
14 Hb_079326_010 0.0959710478 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
15 Hb_001221_040 0.0969508776 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
16 Hb_000684_180 0.0973811991 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
17 Hb_000317_440 0.0977052153 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
18 Hb_000318_140 0.0980231246 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
19 Hb_000343_230 0.0995452211 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
20 Hb_007668_040 0.1000346686 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]

Gene co-expression network

sample Hb_000116_170 Hb_000116_170 Hb_004608_020 Hb_004608_020 Hb_000116_170--Hb_004608_020 Hb_000631_150 Hb_000631_150 Hb_000116_170--Hb_000631_150 Hb_006922_080 Hb_006922_080 Hb_000116_170--Hb_006922_080 Hb_025557_020 Hb_025557_020 Hb_000116_170--Hb_025557_020 Hb_000849_100 Hb_000849_100 Hb_000116_170--Hb_000849_100 Hb_009118_010 Hb_009118_010 Hb_000116_170--Hb_009118_010 Hb_004608_020--Hb_009118_010 Hb_004608_020--Hb_000631_150 Hb_000457_060 Hb_000457_060 Hb_004608_020--Hb_000457_060 Hb_000017_340 Hb_000017_340 Hb_004608_020--Hb_000017_340 Hb_000078_100 Hb_000078_100 Hb_004608_020--Hb_000078_100 Hb_000317_440 Hb_000317_440 Hb_000631_150--Hb_000317_440 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000631_150--Hb_000849_100 Hb_000318_140 Hb_000318_140 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_000012_090 Hb_000012_090 Hb_006922_080--Hb_000012_090 Hb_003453_020 Hb_003453_020 Hb_006922_080--Hb_003453_020 Hb_000176_110 Hb_000176_110 Hb_006922_080--Hb_000176_110 Hb_006922_080--Hb_009118_010 Hb_003656_130 Hb_003656_130 Hb_006922_080--Hb_003656_130 Hb_025557_020--Hb_000318_140 Hb_164010_020 Hb_164010_020 Hb_025557_020--Hb_164010_020 Hb_025557_020--Hb_000631_150 Hb_018663_020 Hb_018663_020 Hb_025557_020--Hb_018663_020 Hb_001226_180 Hb_001226_180 Hb_025557_020--Hb_001226_180 Hb_000849_100--Hb_000134_360 Hb_006002_030 Hb_006002_030 Hb_000849_100--Hb_006002_030 Hb_003716_020 Hb_003716_020 Hb_000849_100--Hb_003716_020 Hb_002725_070 Hb_002725_070 Hb_000849_100--Hb_002725_070 Hb_002235_320 Hb_002235_320 Hb_000849_100--Hb_002235_320 Hb_003602_040 Hb_003602_040 Hb_009118_010--Hb_003602_040 Hb_009118_010--Hb_000012_090 Hb_000322_050 Hb_000322_050 Hb_009118_010--Hb_000322_050 Hb_003434_060 Hb_003434_060 Hb_009118_010--Hb_003434_060 Hb_000956_030 Hb_000956_030 Hb_009118_010--Hb_000956_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.9629 8.1373 6.50687 8.69381 37.9267 37.3877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.5205 7.71742 9.79444 13.7103 5.73366

CAGE analysis