Hb_000116_180

Information

Type -
Description -
Location Contig116: 158458-168747
Sequence    

Annotation

kegg
ID rcu:RCOM_0874330
description heterogeneous nuclear ribonucleoprotein, putative
nr
ID XP_012065387.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
swissprot
ID Q5E9J1
description Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3
trembl
ID A0A067L5N9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22393 PE=4 SV=1
Gene Ontology
ID GO:0019013
description heterogeneous nuclear ribonucleoprotein h2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04826: 159149-168642 , PASA_asmbl_04827: 158804-159837 , PASA_asmbl_04828: 159566-168684 , PASA_asmbl_04829: 162140-162347 , PASA_asmbl_04831: 169481-174339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_180 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
2 Hb_000207_310 0.0601810817 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
3 Hb_000913_050 0.0687693898 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
4 Hb_000794_050 0.0690229646 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
5 Hb_000926_190 0.0699591174 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
6 Hb_003849_250 0.0702690499 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
7 Hb_000866_470 0.0709684179 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
8 Hb_108216_040 0.0712126009 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
9 Hb_006915_070 0.07177522 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
10 Hb_001828_160 0.0722657297 - - hypothetical protein F775_31105 [Aegilops tauschii]
11 Hb_002367_130 0.0728699556 - - UNC-50 family protein isoform 1 [Theobroma cacao]
12 Hb_008406_110 0.0744514028 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
13 Hb_144787_030 0.0755597911 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
14 Hb_005276_210 0.0772950659 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
15 Hb_002527_030 0.0775154272 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like [Jatropha curcas]
16 Hb_000320_200 0.0775480321 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
17 Hb_000358_250 0.0786762982 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
18 Hb_005245_130 0.078939476 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
19 Hb_000714_050 0.0795904221 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
20 Hb_000345_170 0.0812050794 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_180 Hb_000116_180 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_003849_250 Hb_003849_250 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_001828_160 Hb_001828_160 Hb_000207_310--Hb_001828_160 Hb_002890_020 Hb_002890_020 Hb_000207_310--Hb_002890_020 Hb_000207_310--Hb_000913_050 Hb_000029_130 Hb_000029_130 Hb_000207_310--Hb_000029_130 Hb_108216_040 Hb_108216_040 Hb_000207_310--Hb_108216_040 Hb_000913_050--Hb_001828_160 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000913_050--Hb_000029_130 Hb_001444_010 Hb_001444_010 Hb_000913_050--Hb_001444_010 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000794_050--Hb_000926_190 Hb_033720_010 Hb_033720_010 Hb_000794_050--Hb_033720_010 Hb_001390_110 Hb_001390_110 Hb_000794_050--Hb_001390_110 Hb_000853_230 Hb_000853_230 Hb_000794_050--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_000794_050--Hb_006620_020 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_023386_040 Hb_023386_040 Hb_000926_190--Hb_023386_040 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_008406_110 Hb_008406_110 Hb_003849_250--Hb_008406_110 Hb_003849_250--Hb_000334_270 Hb_003849_250--Hb_000866_470 Hb_000358_250 Hb_000358_250 Hb_003849_250--Hb_000358_250 Hb_003849_250--Hb_001828_160 Hb_000866_470--Hb_000913_050 Hb_030131_040 Hb_030131_040 Hb_000866_470--Hb_030131_040 Hb_000085_150 Hb_000085_150 Hb_000866_470--Hb_000085_150 Hb_001300_070 Hb_001300_070 Hb_000866_470--Hb_001300_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.6788 16.4431 12.3069 10.116 39.2686 32.9613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4314 21.0729 13.978 14.0783 17.1386

CAGE analysis