Hb_000116_190

Information

Type -
Description -
Location Contig116: 169345-174399
Sequence    

Annotation

kegg
ID rcu:RCOM_0874340
description hypothetical protein
nr
ID XP_002521719.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6V0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0874340 PE=4 SV=1
Gene Ontology
ID GO:0071816
description tail-anchored protein insertion receptor wrb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04831: 169481-174339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001051_050 0.0801806839 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002871_140 0.0948151843 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
4 Hb_000903_010 0.0972178653 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
5 Hb_009524_030 0.0979665254 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
6 Hb_002774_190 0.0990908024 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
7 Hb_001242_120 0.1054827312 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
8 Hb_000787_060 0.1067488818 - - thioredoxin domain-containing protein, putative [Ricinus communis]
9 Hb_000212_440 0.1067757659 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000029_110 0.106823944 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007821_030 0.1072830274 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
12 Hb_000108_020 0.1073792261 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
13 Hb_003058_100 0.1079105257 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Jatropha curcas]
14 Hb_004109_120 0.1086148202 - - PREDICTED: kinesin-related protein 6 isoform X1 [Jatropha curcas]
15 Hb_000046_330 0.1088520643 - - PREDICTED: uncharacterized protein LOC105631826 [Jatropha curcas]
16 Hb_001022_030 0.1100773851 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
17 Hb_000061_180 0.1104555288 - - exonuclease, putative [Ricinus communis]
18 Hb_005127_030 0.1109385158 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_000085_070 0.1123879172 - - PREDICTED: trigger factor-like protein TIG, Chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001882_010 0.1133613717 - - -

Gene co-expression network

sample Hb_000116_190 Hb_000116_190 Hb_001051_050 Hb_001051_050 Hb_000116_190--Hb_001051_050 Hb_002871_140 Hb_002871_140 Hb_000116_190--Hb_002871_140 Hb_000903_010 Hb_000903_010 Hb_000116_190--Hb_000903_010 Hb_009524_030 Hb_009524_030 Hb_000116_190--Hb_009524_030 Hb_002774_190 Hb_002774_190 Hb_000116_190--Hb_002774_190 Hb_001242_120 Hb_001242_120 Hb_000116_190--Hb_001242_120 Hb_002928_090 Hb_002928_090 Hb_001051_050--Hb_002928_090 Hb_000014_040 Hb_000014_040 Hb_001051_050--Hb_000014_040 Hb_001051_050--Hb_001242_120 Hb_000645_280 Hb_000645_280 Hb_001051_050--Hb_000645_280 Hb_007821_030 Hb_007821_030 Hb_001051_050--Hb_007821_030 Hb_002871_140--Hb_000903_010 Hb_000154_050 Hb_000154_050 Hb_002871_140--Hb_000154_050 Hb_002749_080 Hb_002749_080 Hb_002871_140--Hb_002749_080 Hb_005064_010 Hb_005064_010 Hb_002871_140--Hb_005064_010 Hb_002837_040 Hb_002837_040 Hb_002871_140--Hb_002837_040 Hb_033642_040 Hb_033642_040 Hb_002871_140--Hb_033642_040 Hb_000903_010--Hb_002837_040 Hb_004064_040 Hb_004064_040 Hb_000903_010--Hb_004064_040 Hb_000787_060 Hb_000787_060 Hb_000903_010--Hb_000787_060 Hb_000903_010--Hb_002749_080 Hb_001002_060 Hb_001002_060 Hb_000903_010--Hb_001002_060 Hb_000265_070 Hb_000265_070 Hb_009524_030--Hb_000265_070 Hb_000358_210 Hb_000358_210 Hb_009524_030--Hb_000358_210 Hb_000085_070 Hb_000085_070 Hb_009524_030--Hb_000085_070 Hb_007741_120 Hb_007741_120 Hb_009524_030--Hb_007741_120 Hb_024570_040 Hb_024570_040 Hb_009524_030--Hb_024570_040 Hb_000212_120 Hb_000212_120 Hb_002774_190--Hb_000212_120 Hb_028487_070 Hb_028487_070 Hb_002774_190--Hb_028487_070 Hb_032202_220 Hb_032202_220 Hb_002774_190--Hb_032202_220 Hb_134849_010 Hb_134849_010 Hb_002774_190--Hb_134849_010 Hb_000375_390 Hb_000375_390 Hb_002774_190--Hb_000375_390 Hb_000061_180 Hb_000061_180 Hb_002774_190--Hb_000061_180 Hb_012733_040 Hb_012733_040 Hb_001242_120--Hb_012733_040 Hb_005725_130 Hb_005725_130 Hb_001242_120--Hb_005725_130 Hb_001242_120--Hb_002928_090 Hb_002301_100 Hb_002301_100 Hb_001242_120--Hb_002301_100 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83527 1.92386 11.6842 9.84496 5.90138 6.58307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19092 5.13959 2.95321 6.61394 12.6253

CAGE analysis