Hb_000116_210

Information

Type -
Description -
Location Contig116: 176178-187894
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10460g
description POPTRDRAFT_558784; hypothetical protein
nr
ID XP_012065395.1
description PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
swissprot
ID Q5T5C0
description Syntaxin-binding protein 5 OS=Homo sapiens GN=STXBP5 PE=1 SV=1
trembl
ID B9H674
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s10460g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04833: 176156-182098 , PASA_asmbl_04834: 178162-182786 , PASA_asmbl_04836: 182957-185650 , PASA_asmbl_04837: 185867-187705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_210 0.0 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
2 Hb_002876_250 0.085169584 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
3 Hb_000805_230 0.1030404449 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
4 Hb_001288_070 0.1122560515 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
5 Hb_000120_160 0.1131943686 - - unnamed protein product [Vitis vinifera]
6 Hb_002154_020 0.1142476071 - - protein with unknown function [Ricinus communis]
7 Hb_023344_060 0.116137968 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
8 Hb_000805_190 0.1165867325 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
9 Hb_002915_070 0.1181977738 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
10 Hb_000059_130 0.1203263608 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
11 Hb_000207_290 0.1260631848 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
12 Hb_002387_040 0.1317610296 - - protein transporter, putative [Ricinus communis]
13 Hb_000069_780 0.1354408583 - - atpob1, putative [Ricinus communis]
14 Hb_000941_080 0.1361694631 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
15 Hb_004724_330 0.1399314626 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
16 Hb_003752_120 0.1434022832 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
17 Hb_001195_350 0.14481247 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
18 Hb_004965_080 0.1469645053 - - hypothetical protein F383_09654 [Gossypium arboreum]
19 Hb_143766_030 0.1478148467 - - protein with unknown function [Ricinus communis]
20 Hb_002471_140 0.1485164098 - - PREDICTED: protein OBERON 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_210 Hb_000116_210 Hb_002876_250 Hb_002876_250 Hb_000116_210--Hb_002876_250 Hb_000805_230 Hb_000805_230 Hb_000116_210--Hb_000805_230 Hb_001288_070 Hb_001288_070 Hb_000116_210--Hb_001288_070 Hb_000120_160 Hb_000120_160 Hb_000116_210--Hb_000120_160 Hb_002154_020 Hb_002154_020 Hb_000116_210--Hb_002154_020 Hb_023344_060 Hb_023344_060 Hb_000116_210--Hb_023344_060 Hb_002876_250--Hb_000120_160 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_000805_190 Hb_000805_190 Hb_002876_250--Hb_000805_190 Hb_002915_070 Hb_002915_070 Hb_000805_230--Hb_002915_070 Hb_000179_230 Hb_000179_230 Hb_000805_230--Hb_000179_230 Hb_000805_230--Hb_000120_160 Hb_004032_310 Hb_004032_310 Hb_000805_230--Hb_004032_310 Hb_000448_060 Hb_000448_060 Hb_000805_230--Hb_000448_060 Hb_001288_070--Hb_000120_160 Hb_008511_100 Hb_008511_100 Hb_001288_070--Hb_008511_100 Hb_001288_070--Hb_000805_230 Hb_000866_090 Hb_000866_090 Hb_001288_070--Hb_000866_090 Hb_001288_070--Hb_002915_070 Hb_005496_180 Hb_005496_180 Hb_000120_160--Hb_005496_180 Hb_000120_160--Hb_002154_020 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_012286_090 Hb_012286_090 Hb_023344_060--Hb_012286_090 Hb_000111_370 Hb_000111_370 Hb_023344_060--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_023344_060--Hb_009372_020 Hb_004724_330 Hb_004724_330 Hb_023344_060--Hb_004724_330 Hb_023344_060--Hb_000805_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.27791 21.3779 6.83184 8.80569 1.84065 2.09009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84359 1.68782 5.47431 8.00691 4.84937

CAGE analysis