Hb_000116_230

Information

Type -
Description -
Location Contig116: 197529-209282
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_230 0.0 - - -
2 Hb_000599_140 0.1188009299 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like [Populus euphratica]
3 Hb_010407_070 0.1450201299 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
4 Hb_000237_080 0.1469507083 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
5 Hb_001655_070 0.1520264826 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
6 Hb_002798_060 0.155993391 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
7 Hb_008959_030 0.1578688762 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
8 Hb_000016_100 0.1587794492 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
9 Hb_012052_060 0.1598085538 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
10 Hb_001541_270 0.161693603 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
11 Hb_011472_040 0.1645896281 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
12 Hb_000390_150 0.1647626819 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105632469 [Jatropha curcas]
13 Hb_004230_040 0.1667196999 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005928_110 0.1673041623 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
15 Hb_009615_150 0.1674945615 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
16 Hb_173953_010 0.1678679486 - - hypothetical protein RCOM_1267370 [Ricinus communis]
17 Hb_026698_010 0.1695117905 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
18 Hb_005306_130 0.1703043442 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_004225_180 0.171173329 - - bel1 homeotic protein, putative [Ricinus communis]
20 Hb_001220_030 0.1715848028 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]

Gene co-expression network

sample Hb_000116_230 Hb_000116_230 Hb_000599_140 Hb_000599_140 Hb_000116_230--Hb_000599_140 Hb_010407_070 Hb_010407_070 Hb_000116_230--Hb_010407_070 Hb_000237_080 Hb_000237_080 Hb_000116_230--Hb_000237_080 Hb_001655_070 Hb_001655_070 Hb_000116_230--Hb_001655_070 Hb_002798_060 Hb_002798_060 Hb_000116_230--Hb_002798_060 Hb_008959_030 Hb_008959_030 Hb_000116_230--Hb_008959_030 Hb_026698_010 Hb_026698_010 Hb_000599_140--Hb_026698_010 Hb_000599_140--Hb_010407_070 Hb_000599_140--Hb_002798_060 Hb_000599_140--Hb_008959_030 Hb_005306_130 Hb_005306_130 Hb_000599_140--Hb_005306_130 Hb_010407_070--Hb_026698_010 Hb_004225_180 Hb_004225_180 Hb_010407_070--Hb_004225_180 Hb_000050_100 Hb_000050_100 Hb_010407_070--Hb_000050_100 Hb_007849_040 Hb_007849_040 Hb_010407_070--Hb_007849_040 Hb_001318_030 Hb_001318_030 Hb_000237_080--Hb_001318_030 Hb_004785_060 Hb_004785_060 Hb_000237_080--Hb_004785_060 Hb_009615_150 Hb_009615_150 Hb_000237_080--Hb_009615_150 Hb_002813_050 Hb_002813_050 Hb_000237_080--Hb_002813_050 Hb_005147_090 Hb_005147_090 Hb_000237_080--Hb_005147_090 Hb_000859_060 Hb_000859_060 Hb_000237_080--Hb_000859_060 Hb_004055_010 Hb_004055_010 Hb_001655_070--Hb_004055_010 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_001655_070--Hb_008959_030 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_004221_010 Hb_004221_010 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_004607_150 Hb_004607_150 Hb_002798_060--Hb_004607_150 Hb_009486_190 Hb_009486_190 Hb_002798_060--Hb_009486_190 Hb_002798_060--Hb_008959_030 Hb_004012_010 Hb_004012_010 Hb_002798_060--Hb_004012_010 Hb_023536_010 Hb_023536_010 Hb_002798_060--Hb_023536_010 Hb_008959_030--Hb_004055_010 Hb_000483_350 Hb_000483_350 Hb_008959_030--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_008959_030--Hb_004109_200 Hb_005928_110 Hb_005928_110 Hb_008959_030--Hb_005928_110 Hb_008959_030--Hb_004221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.598256 0.924748 0.0556059 0.182616 0.607067 0.599428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.938736 0.738422 0.358255 0.540214 0

CAGE analysis