Hb_000116_240

Information

Type transcription factor
Description TF Family: HB
Location Contig116: 213576-216619
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10480g
description POPTRDRAFT_650992; homeobox-leucine zipper family protein
nr
ID XP_002306432.1
description homeobox-leucine zipper family protein [Populus trichocarpa]
swissprot
ID O81788
description WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1
trembl
ID B9H676
description Homeobox-leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0005s10480g PE=4 SV=1
Gene Ontology
ID GO:0005634
description wuschel-related homeobox 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04842: 213803-216609 , PASA_asmbl_04843: 213803-215727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_240 0.0 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
2 Hb_005485_070 0.0794199113 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
3 Hb_000309_030 0.091494582 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
4 Hb_000590_070 0.0933490316 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
5 Hb_001277_400 0.0980321328 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
6 Hb_000261_310 0.098830172 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
7 Hb_000318_170 0.1036569103 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
8 Hb_007575_030 0.1048171992 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
9 Hb_012760_090 0.1149690194 - - Aspartic proteinase-like protein 1 [Morus notabilis]
10 Hb_005333_080 0.1152362821 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004883_020 0.116341635 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
12 Hb_008695_150 0.1165471297 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]
13 Hb_001221_390 0.1204694432 - - Phospholipase C 4 precursor, putative [Ricinus communis]
14 Hb_143766_080 0.1213448053 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
15 Hb_034507_060 0.1243827432 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
16 Hb_010050_020 0.1273463732 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
17 Hb_000438_010 0.1275477213 - - -
18 Hb_000085_380 0.1276923494 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001754_050 0.1288810879 - - protein arginine n-methyltransferase, putative [Ricinus communis]
20 Hb_000042_380 0.1304965965 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_240 Hb_000116_240 Hb_005485_070 Hb_005485_070 Hb_000116_240--Hb_005485_070 Hb_000309_030 Hb_000309_030 Hb_000116_240--Hb_000309_030 Hb_000590_070 Hb_000590_070 Hb_000116_240--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_000116_240--Hb_001277_400 Hb_000261_310 Hb_000261_310 Hb_000116_240--Hb_000261_310 Hb_000318_170 Hb_000318_170 Hb_000116_240--Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_005485_070--Hb_000590_070 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_000309_030--Hb_000261_310 Hb_004883_020 Hb_004883_020 Hb_000309_030--Hb_004883_020 Hb_000309_030--Hb_000318_170 Hb_010050_020 Hb_010050_020 Hb_000309_030--Hb_010050_020 Hb_000309_030--Hb_000590_070 Hb_005181_060 Hb_005181_060 Hb_000590_070--Hb_005181_060 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000120_740 Hb_000120_740 Hb_000590_070--Hb_000120_740 Hb_007575_030 Hb_007575_030 Hb_001277_400--Hb_007575_030 Hb_000042_380 Hb_000042_380 Hb_001277_400--Hb_000042_380 Hb_001277_400--Hb_004883_020 Hb_001277_400--Hb_000590_070 Hb_000256_160 Hb_000256_160 Hb_000261_310--Hb_000256_160 Hb_000094_150 Hb_000094_150 Hb_000261_310--Hb_000094_150 Hb_000261_310--Hb_007575_030 Hb_004096_220 Hb_004096_220 Hb_000261_310--Hb_004096_220 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_000318_170--Hb_007575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.32953 11.407 23.0106 31.9833 2.63826 2.74922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29493 3.14849 1.09255 25.311 17.9784

CAGE analysis