Hb_000116_260

Information

Type -
Description -
Location Contig116: 228675-229862
Sequence    

Annotation

kegg
ID rcu:RCOM_0874600
description hypothetical protein
nr
ID XP_012065406.1
description PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L991
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04850: 227752-228144 , PASA_asmbl_04851: 227760-230049
cDNA
(Sanger)
(ID:Location)		 053_P16.ab1: 227760-228915

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_260 0.0 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
2 Hb_001352_020 0.058311777 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
3 Hb_000497_300 0.0607741155 - - peroxisomal membrane protein [Hevea brasiliensis]
4 Hb_007416_060 0.0621130912 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
5 Hb_164010_030 0.0682171214 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
6 Hb_000471_110 0.0682385996 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39980, chloroplastic [Jatropha curcas]
7 Hb_000406_130 0.0783104125 - - vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_002620_020 0.0787640839 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
9 Hb_003847_030 0.0815146836 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
10 Hb_008566_030 0.0824815769 - - hypothetical protein POPTR_0013s02780g [Populus trichocarpa]
11 Hb_005488_200 0.0832526123 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
12 Hb_001818_100 0.0860912124 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_000783_020 0.0866841997 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
14 Hb_001789_150 0.0867133146 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
15 Hb_005054_110 0.0871465392 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_003376_250 0.0872638719 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
17 Hb_010344_050 0.0874498571 - - Adagio 1 -like protein [Gossypium arboreum]
18 Hb_000327_180 0.0876246982 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
19 Hb_000856_010 0.0884928875 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
20 Hb_009803_050 0.0901553424 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_260 Hb_000116_260 Hb_001352_020 Hb_001352_020 Hb_000116_260--Hb_001352_020 Hb_000497_300 Hb_000497_300 Hb_000116_260--Hb_000497_300 Hb_007416_060 Hb_007416_060 Hb_000116_260--Hb_007416_060 Hb_164010_030 Hb_164010_030 Hb_000116_260--Hb_164010_030 Hb_000471_110 Hb_000471_110 Hb_000116_260--Hb_000471_110 Hb_000406_130 Hb_000406_130 Hb_000116_260--Hb_000406_130 Hb_001352_020--Hb_000497_300 Hb_001352_020--Hb_000406_130 Hb_001789_150 Hb_001789_150 Hb_001352_020--Hb_001789_150 Hb_001352_020--Hb_000471_110 Hb_010344_050 Hb_010344_050 Hb_001352_020--Hb_010344_050 Hb_000497_300--Hb_010344_050 Hb_004712_130 Hb_004712_130 Hb_000497_300--Hb_004712_130 Hb_000497_300--Hb_164010_030 Hb_000497_300--Hb_001789_150 Hb_005488_200 Hb_005488_200 Hb_007416_060--Hb_005488_200 Hb_000783_020 Hb_000783_020 Hb_007416_060--Hb_000783_020 Hb_001489_080 Hb_001489_080 Hb_007416_060--Hb_001489_080 Hb_003376_250 Hb_003376_250 Hb_007416_060--Hb_003376_250 Hb_000436_130 Hb_000436_130 Hb_007416_060--Hb_000436_130 Hb_001377_490 Hb_001377_490 Hb_164010_030--Hb_001377_490 Hb_001163_100 Hb_001163_100 Hb_164010_030--Hb_001163_100 Hb_000260_010 Hb_000260_010 Hb_164010_030--Hb_000260_010 Hb_001014_030 Hb_001014_030 Hb_164010_030--Hb_001014_030 Hb_000479_140 Hb_000479_140 Hb_000471_110--Hb_000479_140 Hb_000471_110--Hb_000406_130 Hb_000471_110--Hb_000497_300 Hb_000471_110--Hb_164010_030 Hb_000406_130--Hb_000479_140 Hb_008176_010 Hb_008176_010 Hb_000406_130--Hb_008176_010 Hb_000406_130--Hb_003376_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.33068 7.00299 5.06482 11.6234 5.51032 8.47778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.62297 12.7583 15.314 8.48949 13.7624

CAGE analysis