Hb_000116_270

Information

Type -
Description -
Location Contig116: 235292-239130
Sequence    

Annotation

kegg
ID rcu:RCOM_0874710
description srpk, putative (EC:2.7.12.1)
nr
ID XP_012065407.1
description PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
swissprot
ID Q45FA5
description Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1
trembl
ID A0A067LHV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22401 PE=3 SV=1
Gene Ontology
ID GO:0004674
description srsf protein kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04853: 235317-235493 , PASA_asmbl_04854: 235939-238878 , PASA_asmbl_04855: 236468-236587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_270 0.0 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
2 Hb_001159_130 0.049112721 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
3 Hb_001016_120 0.0539293371 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
4 Hb_000200_020 0.0555970921 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
5 Hb_084646_010 0.0584624778 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
6 Hb_006478_020 0.0628608034 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_000477_060 0.0662028026 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
8 Hb_003025_100 0.0664580272 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
9 Hb_000260_350 0.0677518935 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000599_250 0.0691363783 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
11 Hb_155159_020 0.0692684905 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
12 Hb_149985_010 0.071364962 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
13 Hb_010964_040 0.0714025602 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
14 Hb_008841_020 0.0716138698 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
15 Hb_007416_090 0.0733510367 - - UDP-sugar transporter, putative [Ricinus communis]
16 Hb_027380_130 0.0741809862 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
17 Hb_000081_160 0.0754615835 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
18 Hb_000749_220 0.0756838906 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
19 Hb_026198_070 0.0761488372 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
20 Hb_001300_150 0.0765440069 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_270 Hb_000116_270 Hb_001159_130 Hb_001159_130 Hb_000116_270--Hb_001159_130 Hb_001016_120 Hb_001016_120 Hb_000116_270--Hb_001016_120 Hb_000200_020 Hb_000200_020 Hb_000116_270--Hb_000200_020 Hb_084646_010 Hb_084646_010 Hb_000116_270--Hb_084646_010 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_155159_020 Hb_155159_020 Hb_001159_130--Hb_155159_020 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_000603_150 Hb_000603_150 Hb_001159_130--Hb_000603_150 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_149985_010 Hb_149985_010 Hb_001016_120--Hb_149985_010 Hb_001016_120--Hb_084646_010 Hb_002481_080 Hb_002481_080 Hb_001016_120--Hb_002481_080 Hb_028227_070 Hb_028227_070 Hb_001016_120--Hb_028227_070 Hb_005054_110 Hb_005054_110 Hb_001016_120--Hb_005054_110 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_084646_010--Hb_155159_020 Hb_000787_020 Hb_000787_020 Hb_084646_010--Hb_000787_020 Hb_027380_130 Hb_027380_130 Hb_084646_010--Hb_027380_130 Hb_084646_010--Hb_001159_130 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_003697_040 Hb_003697_040 Hb_000477_060--Hb_003697_040 Hb_003605_090 Hb_003605_090 Hb_000477_060--Hb_003605_090 Hb_000363_360 Hb_000363_360 Hb_000477_060--Hb_000363_360 Hb_004934_100 Hb_004934_100 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0283 8.49988 11.1465 21.4086 9.49495 15.8299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6265 18.0327 19.8538 15.4388 12.534

CAGE analysis