Hb_000116_280

Information

Type -
Description -
Location Contig116: 240193-251294
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10520g
description POPTRDRAFT_558791; hypothetical protein
nr
ID XP_012065408.1
description PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
swissprot
ID Q9HGL2
description Uncharacterized calcium-binding protein C800.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC800.10c PE=3 SV=1
trembl
ID A0A067LGU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22402 PE=4 SV=1
Gene Ontology
ID GO:0005509
description epidermal growth factor receptor substrate 15-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04856: 240301-241859 , PASA_asmbl_04858: 242066-243263 , PASA_asmbl_04859: 243264-245122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_280 0.0 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
2 Hb_005399_020 0.0610692224 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
3 Hb_003018_160 0.0637160687 - - PREDICTED: uncharacterized protein LOC105628876 [Jatropha curcas]
4 Hb_000367_290 0.0693153554 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
5 Hb_001975_020 0.0702939708 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
6 Hb_006816_300 0.0750139959 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
7 Hb_002105_080 0.0769178109 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
8 Hb_002133_030 0.079613117 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
9 Hb_005295_040 0.0803194218 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
10 Hb_006002_030 0.0820947992 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
11 Hb_011497_010 0.08362447 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
12 Hb_000327_310 0.0864486597 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
13 Hb_000685_080 0.0882452666 - - protein binding protein, putative [Ricinus communis]
14 Hb_001575_080 0.0897807711 - - PREDICTED: villin-4-like [Jatropha curcas]
15 Hb_000046_450 0.0917833291 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
16 Hb_003866_020 0.0921404431 - - conserved hypothetical protein [Ricinus communis]
17 Hb_025477_060 0.0929094962 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
18 Hb_000002_440 0.093285566 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_000152_890 0.0935638595 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
20 Hb_003125_060 0.0935782154 - - PREDICTED: snurportin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_280 Hb_000116_280 Hb_005399_020 Hb_005399_020 Hb_000116_280--Hb_005399_020 Hb_003018_160 Hb_003018_160 Hb_000116_280--Hb_003018_160 Hb_000367_290 Hb_000367_290 Hb_000116_280--Hb_000367_290 Hb_001975_020 Hb_001975_020 Hb_000116_280--Hb_001975_020 Hb_006816_300 Hb_006816_300 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080 Hb_012395_160 Hb_012395_160 Hb_005399_020--Hb_012395_160 Hb_005038_020 Hb_005038_020 Hb_005399_020--Hb_005038_020 Hb_000685_080 Hb_000685_080 Hb_005399_020--Hb_000685_080 Hb_005399_020--Hb_000367_290 Hb_148209_020 Hb_148209_020 Hb_005399_020--Hb_148209_020 Hb_011497_010 Hb_011497_010 Hb_003018_160--Hb_011497_010 Hb_001575_080 Hb_001575_080 Hb_003018_160--Hb_001575_080 Hb_003018_160--Hb_006816_300 Hb_002493_090 Hb_002493_090 Hb_003018_160--Hb_002493_090 Hb_003018_160--Hb_001975_020 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_046615_020 Hb_046615_020 Hb_001975_020--Hb_046615_020 Hb_031754_010 Hb_031754_010 Hb_001975_020--Hb_031754_010 Hb_001975_020--Hb_005295_040 Hb_007849_020 Hb_007849_020 Hb_006816_300--Hb_007849_020 Hb_006816_300--Hb_002105_080 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_000227_380 Hb_000227_380 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070 Hb_002105_080--Hb_007849_020 Hb_002105_080--Hb_005295_040 Hb_002105_080--Hb_000227_380 Hb_002105_080--Hb_000250_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.6584 36.3603 9.27908 11.5849 61.2227 63.6745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3718 8.79818 23.2812 13.7767 8.57337

CAGE analysis