Hb_000116_290

Information

Type -
Description -
Location Contig116: 252296-253576
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10530g
description POPTRDRAFT_208272; hypothetical protein
nr
ID XP_012065409.1
description PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
swissprot
ID Q9SVG0
description Amino acid transporter ANTL2 OS=Arabidopsis thaliana GN=At4g38250 PE=1 SV=1
trembl
ID A0A067L5P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22403 PE=4 SV=1
Gene Ontology
ID GO:0016021
description proton-coupled amino acid transporter 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_290 0.0 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
2 Hb_000976_340 0.0907704276 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_000094_010 0.097824587 - - lrr receptor protein kinase, putative [Ricinus communis]
4 Hb_000589_330 0.1106312143 - - kinase, putative [Ricinus communis]
5 Hb_050236_010 0.1181471864 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
6 Hb_001248_170 0.1212387865 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
7 Hb_004282_040 0.1214428491 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
8 Hb_003656_170 0.1267091707 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
9 Hb_064047_010 0.1278162361 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007007_090 0.1328711399 - - phospholipase d beta, putative [Ricinus communis]
11 Hb_002529_080 0.1339264411 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
12 Hb_002431_090 0.1339516951 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000391_060 0.1343765674 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
14 Hb_006573_280 0.1345319523 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
15 Hb_002324_050 0.1365096358 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
16 Hb_000000_070 0.1366279496 - - allene oxide synthase [Hevea brasiliensis]
17 Hb_002370_060 0.1370843904 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
18 Hb_000808_160 0.1379943823 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
19 Hb_145139_010 0.1422620504 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
20 Hb_060237_010 0.1435209064 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000116_290 Hb_000116_290 Hb_000976_340 Hb_000976_340 Hb_000116_290--Hb_000976_340 Hb_000094_010 Hb_000094_010 Hb_000116_290--Hb_000094_010 Hb_000589_330 Hb_000589_330 Hb_000116_290--Hb_000589_330 Hb_050236_010 Hb_050236_010 Hb_000116_290--Hb_050236_010 Hb_001248_170 Hb_001248_170 Hb_000116_290--Hb_001248_170 Hb_004282_040 Hb_004282_040 Hb_000116_290--Hb_004282_040 Hb_000976_340--Hb_001248_170 Hb_000976_340--Hb_000094_010 Hb_005784_020 Hb_005784_020 Hb_000976_340--Hb_005784_020 Hb_008040_060 Hb_008040_060 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_002529_080 Hb_002529_080 Hb_000094_010--Hb_002529_080 Hb_003914_050 Hb_003914_050 Hb_000094_010--Hb_003914_050 Hb_000094_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000094_010--Hb_000522_130 Hb_001013_050 Hb_001013_050 Hb_000589_330--Hb_001013_050 Hb_007007_090 Hb_007007_090 Hb_000589_330--Hb_007007_090 Hb_001913_030 Hb_001913_030 Hb_000589_330--Hb_001913_030 Hb_003835_030 Hb_003835_030 Hb_000589_330--Hb_003835_030 Hb_002097_130 Hb_002097_130 Hb_000589_330--Hb_002097_130 Hb_001269_530 Hb_001269_530 Hb_000589_330--Hb_001269_530 Hb_003656_170 Hb_003656_170 Hb_050236_010--Hb_003656_170 Hb_004306_140 Hb_004306_140 Hb_050236_010--Hb_004306_140 Hb_002324_050 Hb_002324_050 Hb_050236_010--Hb_002324_050 Hb_050236_010--Hb_000976_340 Hb_001123_170 Hb_001123_170 Hb_050236_010--Hb_001123_170 Hb_001248_170--Hb_007007_090 Hb_001248_170--Hb_008040_060 Hb_002370_060 Hb_002370_060 Hb_001248_170--Hb_002370_060 Hb_006573_280 Hb_006573_280 Hb_001248_170--Hb_006573_280 Hb_001248_170--Hb_002529_080 Hb_002849_110 Hb_002849_110 Hb_004282_040--Hb_002849_110 Hb_000742_260 Hb_000742_260 Hb_004282_040--Hb_000742_260 Hb_009476_160 Hb_009476_160 Hb_004282_040--Hb_009476_160 Hb_004282_040--Hb_000976_340 Hb_000692_230 Hb_000692_230 Hb_004282_040--Hb_000692_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.333025 24.755 6.25933 14.7235 0.0308186 0.0169969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.112616 0.383888 0.495989 5.99052 5.70347

CAGE analysis