Hb_000116_300

Information

Type -
Description -
Location Contig116: 264144-267736
Sequence    

Annotation

kegg
ID rcu:RCOM_0874940
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002521729.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q84VG6
description Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2
trembl
ID B9S6W0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0874940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_300 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_006076_010 0.1316007244 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
3 Hb_000792_070 0.1462615506 - - Ataxin-3, putative [Ricinus communis]
4 Hb_000041_150 0.1512233968 - - Stachyose synthase precursor, putative [Ricinus communis]
5 Hb_013405_030 0.1568306515 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001221_170 0.1615911742 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
7 Hb_000997_210 0.1656067487 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
8 Hb_007304_110 0.1677973394 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
9 Hb_004968_100 0.1691011298 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
10 Hb_153258_010 0.1718955676 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
11 Hb_046198_010 0.1720742462 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
12 Hb_001975_160 0.1781566299 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000187_090 0.1785518761 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
14 Hb_000062_150 0.1797405642 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
15 Hb_019654_100 0.1802985796 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
16 Hb_002888_030 0.182467644 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
17 Hb_010795_010 0.1829219914 - - protein with unknown function [Ricinus communis]
18 Hb_001946_410 0.1830119244 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
19 Hb_004046_020 0.1830311291 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
20 Hb_007632_220 0.1839737468 - - RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000116_300 Hb_000116_300 Hb_006076_010 Hb_006076_010 Hb_000116_300--Hb_006076_010 Hb_000792_070 Hb_000792_070 Hb_000116_300--Hb_000792_070 Hb_000041_150 Hb_000041_150 Hb_000116_300--Hb_000041_150 Hb_013405_030 Hb_013405_030 Hb_000116_300--Hb_013405_030 Hb_001221_170 Hb_001221_170 Hb_000116_300--Hb_001221_170 Hb_000997_210 Hb_000997_210 Hb_000116_300--Hb_000997_210 Hb_004968_100 Hb_004968_100 Hb_006076_010--Hb_004968_100 Hb_001946_410 Hb_001946_410 Hb_006076_010--Hb_001946_410 Hb_046198_010 Hb_046198_010 Hb_006076_010--Hb_046198_010 Hb_000567_380 Hb_000567_380 Hb_006076_010--Hb_000567_380 Hb_000116_010 Hb_000116_010 Hb_006076_010--Hb_000116_010 Hb_001136_090 Hb_001136_090 Hb_000792_070--Hb_001136_090 Hb_007101_170 Hb_007101_170 Hb_000792_070--Hb_007101_170 Hb_001894_150 Hb_001894_150 Hb_000792_070--Hb_001894_150 Hb_000676_110 Hb_000676_110 Hb_000792_070--Hb_000676_110 Hb_148909_010 Hb_148909_010 Hb_000792_070--Hb_148909_010 Hb_153258_010 Hb_153258_010 Hb_000041_150--Hb_153258_010 Hb_127003_010 Hb_127003_010 Hb_000041_150--Hb_127003_010 Hb_000041_150--Hb_000997_210 Hb_000187_090 Hb_000187_090 Hb_000041_150--Hb_000187_090 Hb_000041_150--Hb_001221_170 Hb_000120_050 Hb_000120_050 Hb_000041_150--Hb_000120_050 Hb_000574_390 Hb_000574_390 Hb_013405_030--Hb_000574_390 Hb_001975_160 Hb_001975_160 Hb_013405_030--Hb_001975_160 Hb_002518_140 Hb_002518_140 Hb_013405_030--Hb_002518_140 Hb_000047_030 Hb_000047_030 Hb_013405_030--Hb_000047_030 Hb_001507_020 Hb_001507_020 Hb_013405_030--Hb_001507_020 Hb_015198_020 Hb_015198_020 Hb_013405_030--Hb_015198_020 Hb_019654_100 Hb_019654_100 Hb_001221_170--Hb_019654_100 Hb_001221_170--Hb_153258_010 Hb_010795_010 Hb_010795_010 Hb_001221_170--Hb_010795_010 Hb_003862_050 Hb_003862_050 Hb_001221_170--Hb_003862_050 Hb_001245_070 Hb_001245_070 Hb_001221_170--Hb_001245_070 Hb_007558_140 Hb_007558_140 Hb_000997_210--Hb_007558_140 Hb_000997_210--Hb_153258_010 Hb_098993_010 Hb_098993_010 Hb_000997_210--Hb_098993_010 Hb_002027_130 Hb_002027_130 Hb_000997_210--Hb_002027_130 Hb_073171_110 Hb_073171_110 Hb_000997_210--Hb_073171_110 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0817303 0.021691 0.0171038 0.0235338 0.09276 0.0191297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0248418 0.0390912 0.110922 0.0311314 0.0411968

CAGE analysis