Hb_000116_340

Information

Type -
Description -
Location Contig116: 288013-288993
Sequence    

Annotation

kegg
ID cit:102627536
description small acidic protein 1-like
nr
ID XP_012077649.1
description PREDICTED: small acidic protein 1 [Jatropha curcas]
swissprot
ID Q9T0H2
description Small acidic protein 1 OS=Arabidopsis thaliana GN=SMAP1 PE=1 SV=1
trembl
ID A9PHA8
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04874: 289623-289924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_340 0.0 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
2 Hb_182291_020 0.0034587548 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
3 Hb_007970_030 0.0064673264 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
4 Hb_003767_020 0.0243239506 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
5 Hb_000160_340 0.0332953 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_002893_140 0.0490927613 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
7 Hb_000073_070 0.0747806386 - - -
8 Hb_000495_090 0.0758544568 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_009554_020 0.079842946 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
10 Hb_105632_010 0.0818692173 - - -
11 Hb_005743_020 0.0818874657 - - -
12 Hb_001274_060 0.1132631228 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
13 Hb_000380_030 0.1180981851 - - Kiwellin, putative [Ricinus communis]
14 Hb_000787_120 0.1203647831 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
15 Hb_003633_110 0.1215351527 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
16 Hb_001459_070 0.1254988377 - - -
17 Hb_107725_010 0.1307054499 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_005015_040 0.1448484296 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
19 Hb_055235_010 0.1524251301 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_028707_060 0.1721122733 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000116_340 Hb_000116_340 Hb_182291_020 Hb_182291_020 Hb_000116_340--Hb_182291_020 Hb_007970_030 Hb_007970_030 Hb_000116_340--Hb_007970_030 Hb_003767_020 Hb_003767_020 Hb_000116_340--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_000116_340--Hb_000160_340 Hb_002893_140 Hb_002893_140 Hb_000116_340--Hb_002893_140 Hb_000073_070 Hb_000073_070 Hb_000116_340--Hb_000073_070 Hb_182291_020--Hb_007970_030 Hb_182291_020--Hb_003767_020 Hb_182291_020--Hb_000160_340 Hb_182291_020--Hb_002893_140 Hb_009554_020 Hb_009554_020 Hb_182291_020--Hb_009554_020 Hb_007970_030--Hb_003767_020 Hb_007970_030--Hb_000160_340 Hb_007970_030--Hb_002893_140 Hb_007970_030--Hb_009554_020 Hb_003767_020--Hb_000160_340 Hb_003767_020--Hb_002893_140 Hb_003767_020--Hb_000073_070 Hb_000160_340--Hb_002893_140 Hb_000160_340--Hb_000073_070 Hb_002893_140--Hb_000073_070 Hb_000495_090 Hb_000495_090 Hb_002893_140--Hb_000495_090 Hb_105632_010 Hb_105632_010 Hb_002893_140--Hb_105632_010 Hb_005743_020 Hb_005743_020 Hb_002893_140--Hb_005743_020 Hb_000073_070--Hb_000495_090 Hb_000073_070--Hb_105632_010 Hb_000073_070--Hb_005743_020 Hb_001274_060 Hb_001274_060 Hb_000073_070--Hb_001274_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.180584 0.789235 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis