Hb_000116_440

Information

Type -
Description -
Location Contig116: 372159-376814
Sequence    

Annotation

kegg
ID rcu:RCOM_0280610
description translation initiation factor, putative
nr
ID XP_012086279.1
description PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
swissprot
ID Q9M060
description Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1
trembl
ID A0A067K2E7
description Eukaryotic translation initiation factor 6 OS=Jatropha curcas GN=EIF6 PE=3 SV=1
Gene Ontology
ID GO:0005730
description eukaryotic translation initiation factor 6-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04883: 372258-374981 , PASA_asmbl_04884: 377560-380808
cDNA
(Sanger)
(ID:Location)		 024_M03.ab1: 372583-374938 , 026_E24.ab1: 372599-374950 , 027_A24.ab1: 372606-374981 , 034_B20.ab1: 372537-374981 , 034_M04.ab1: 372536-374940 , 044_A22.ab1: 372528-374940

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_440 0.0 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
2 Hb_000220_220 0.0686656875 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
3 Hb_000103_090 0.0695425389 - - PREDICTED: protein RDM1 [Jatropha curcas]
4 Hb_002893_080 0.0743022686 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
5 Hb_000003_080 0.0745801721 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
6 Hb_002890_140 0.0769974784 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
7 Hb_032717_080 0.0781388603 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
8 Hb_011310_190 0.0819919538 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
9 Hb_001140_370 0.0862784141 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
10 Hb_027472_150 0.0903744097 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
11 Hb_029879_110 0.0906266882 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
12 Hb_001579_220 0.0916401287 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
13 Hb_007617_050 0.091962541 - - Isoflavone reductase, putative [Ricinus communis]
14 Hb_008406_190 0.0932530678 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
15 Hb_000059_330 0.093584026 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
16 Hb_004970_110 0.0935902682 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
17 Hb_002893_050 0.0939148642 - - hypothetical protein POPTR_0006s26510g [Populus trichocarpa]
18 Hb_004310_130 0.0942729199 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
19 Hb_000853_170 0.0951969318 - - PREDICTED: programmed cell death protein 2 isoform X3 [Populus euphratica]
20 Hb_003599_040 0.0953008217 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000116_440 Hb_000116_440 Hb_000220_220 Hb_000220_220 Hb_000116_440--Hb_000220_220 Hb_000103_090 Hb_000103_090 Hb_000116_440--Hb_000103_090 Hb_002893_080 Hb_002893_080 Hb_000116_440--Hb_002893_080 Hb_000003_080 Hb_000003_080 Hb_000116_440--Hb_000003_080 Hb_002890_140 Hb_002890_140 Hb_000116_440--Hb_002890_140 Hb_032717_080 Hb_032717_080 Hb_000116_440--Hb_032717_080 Hb_001579_220 Hb_001579_220 Hb_000220_220--Hb_001579_220 Hb_003494_200 Hb_003494_200 Hb_000220_220--Hb_003494_200 Hb_000680_160 Hb_000680_160 Hb_000220_220--Hb_000680_160 Hb_029879_110 Hb_029879_110 Hb_000220_220--Hb_029879_110 Hb_000853_170 Hb_000853_170 Hb_000220_220--Hb_000853_170 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190 Hb_007017_030 Hb_007017_030 Hb_002893_080--Hb_007017_030 Hb_008406_190 Hb_008406_190 Hb_002893_080--Hb_008406_190 Hb_000599_300 Hb_000599_300 Hb_002893_080--Hb_000599_300 Hb_003633_030 Hb_003633_030 Hb_002893_080--Hb_003633_030 Hb_002893_080--Hb_001579_220 Hb_000342_100 Hb_000342_100 Hb_000003_080--Hb_000342_100 Hb_020581_010 Hb_020581_010 Hb_000003_080--Hb_020581_010 Hb_000272_020 Hb_000272_020 Hb_000003_080--Hb_000272_020 Hb_000003_080--Hb_000220_220 Hb_001842_100 Hb_001842_100 Hb_000003_080--Hb_001842_100 Hb_000815_040 Hb_000815_040 Hb_002890_140--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_002890_140--Hb_000103_560 Hb_002890_140--Hb_000529_190 Hb_002890_140--Hb_033834_040 Hb_000832_140 Hb_000832_140 Hb_002890_140--Hb_000832_140 Hb_011310_190 Hb_011310_190 Hb_032717_080--Hb_011310_190 Hb_004048_070 Hb_004048_070 Hb_032717_080--Hb_004048_070 Hb_007254_040 Hb_007254_040 Hb_032717_080--Hb_007254_040 Hb_000613_140 Hb_000613_140 Hb_032717_080--Hb_000613_140 Hb_002105_090 Hb_002105_090 Hb_032717_080--Hb_002105_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.5302 36.5522 24.3351 57.1983 70.206 81.5612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
125.002 100.163 49.3506 59.9122 42.6779

CAGE analysis