Hb_000116_450

Information

Type transcription factor
Description TF Family: C3H
Location Contig116: 377715-380956
Sequence    

Annotation

kegg
ID rcu:RCOM_0693420
description RING finger protein 113A, putative
nr
ID XP_012065710.1
description PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q8GX84
description Zinc finger CCCH domain-containing protein 1 OS=Arabidopsis thaliana GN=At1g01350 PE=2 SV=2
trembl
ID A0A067LPE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06518 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger ccch domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04884: 377560-380808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_450 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
2 Hb_000340_530 0.0580922359 - - hypothetical protein VITISV_016664 [Vitis vinifera]
3 Hb_013738_020 0.0615040018 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_002374_370 0.0632202468 - - protein with unknown function [Ricinus communis]
5 Hb_003938_090 0.0637113653 - - conserved hypothetical protein [Ricinus communis]
6 Hb_093458_040 0.0642008416 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
7 Hb_000258_070 0.0643643628 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
8 Hb_004990_010 0.0659662167 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
9 Hb_008847_030 0.0660006912 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
10 Hb_000705_170 0.0677999323 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
11 Hb_002849_130 0.0684445752 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
12 Hb_007416_340 0.0685519713 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_021419_030 0.07019655 - - hypothetical protein glysoja_023295 [Glycine soja]
14 Hb_000976_140 0.0708669441 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
15 Hb_002026_210 0.0712410162 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
16 Hb_001922_150 0.0717875662 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
17 Hb_006831_140 0.0735302415 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_001902_030 0.0735705187 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
19 Hb_002110_080 0.0755610808 - - FH interacting protein 1 [Theobroma cacao]
20 Hb_000260_350 0.0756642907 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000116_450 Hb_000116_450 Hb_000340_530 Hb_000340_530 Hb_000116_450--Hb_000340_530 Hb_013738_020 Hb_013738_020 Hb_000116_450--Hb_013738_020 Hb_002374_370 Hb_002374_370 Hb_000116_450--Hb_002374_370 Hb_003938_090 Hb_003938_090 Hb_000116_450--Hb_003938_090 Hb_093458_040 Hb_093458_040 Hb_000116_450--Hb_093458_040 Hb_000258_070 Hb_000258_070 Hb_000116_450--Hb_000258_070 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_004109_080 Hb_004109_080 Hb_000340_530--Hb_004109_080 Hb_000220_010 Hb_000220_010 Hb_013738_020--Hb_000220_010 Hb_000705_170 Hb_000705_170 Hb_013738_020--Hb_000705_170 Hb_002936_010 Hb_002936_010 Hb_013738_020--Hb_002936_010 Hb_004990_010 Hb_004990_010 Hb_013738_020--Hb_004990_010 Hb_002110_080 Hb_002110_080 Hb_013738_020--Hb_002110_080 Hb_002374_370--Hb_000258_070 Hb_000347_430 Hb_000347_430 Hb_002374_370--Hb_000347_430 Hb_028512_020 Hb_028512_020 Hb_002374_370--Hb_028512_020 Hb_002374_370--Hb_000340_530 Hb_002217_250 Hb_002217_250 Hb_002374_370--Hb_002217_250 Hb_008847_030 Hb_008847_030 Hb_003938_090--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_003647_140 Hb_003647_140 Hb_003938_090--Hb_003647_140 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_002641_060 Hb_002641_060 Hb_003938_090--Hb_002641_060 Hb_002849_130 Hb_002849_130 Hb_093458_040--Hb_002849_130 Hb_006831_140 Hb_006831_140 Hb_093458_040--Hb_006831_140 Hb_093458_040--Hb_002989_020 Hb_000976_140 Hb_000976_140 Hb_093458_040--Hb_000976_140 Hb_000260_350 Hb_000260_350 Hb_093458_040--Hb_000260_350 Hb_000441_090 Hb_000441_090 Hb_000258_070--Hb_000441_090 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_000258_070--Hb_002849_130 Hb_000258_070--Hb_000340_530 Hb_000313_220 Hb_000313_220 Hb_000258_070--Hb_000313_220 Hb_000258_070--Hb_000347_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.12575 12.5044 9.36202 15.0416 11.9481 10.6988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7496 14.8518 9.05198 9.65161 11.5379

CAGE analysis