Hb_000116_470

Information

Type -
Description -
Location Contig116: 400654-405388
Sequence    

Annotation

kegg
ID rcu:RCOM_0280940
description DNA binding protein, putative
nr
ID XP_012065434.1
description PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
swissprot
ID O22812
description AT-hook motif nuclear-localized protein 10 OS=Arabidopsis thaliana GN=AHL10 PE=1 SV=2
trembl
ID A0A067L5R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22423 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04887: 400816-401505 , PASA_asmbl_04889: 406237-406747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_470 0.0 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
2 Hb_021068_050 0.087368033 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
3 Hb_003151_050 0.0940769845 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
4 Hb_000091_090 0.1071744909 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
5 Hb_000124_020 0.1076744151 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
6 Hb_000376_050 0.108055743 - - polyadenylate-binding protein, putative [Ricinus communis]
7 Hb_002411_200 0.1083205984 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002890_280 0.1087602645 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
9 Hb_000313_380 0.1098478443 - - conserved hypothetical protein [Ricinus communis]
10 Hb_023386_080 0.1101816638 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
11 Hb_000923_070 0.1102684333 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007229_060 0.1104544292 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
13 Hb_004951_040 0.1105909067 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
14 Hb_006775_080 0.1110452719 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
15 Hb_004012_010 0.1112025467 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
16 Hb_000056_340 0.1115709923 - - 60S ribosomal protein L34A [Hevea brasiliensis]
17 Hb_001157_030 0.1150915637 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
18 Hb_006501_040 0.1153870602 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
19 Hb_000836_070 0.1158148403 - - protein binding protein, putative [Ricinus communis]
20 Hb_002399_010 0.1161149134 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000116_470 Hb_000116_470 Hb_021068_050 Hb_021068_050 Hb_000116_470--Hb_021068_050 Hb_003151_050 Hb_003151_050 Hb_000116_470--Hb_003151_050 Hb_000091_090 Hb_000091_090 Hb_000116_470--Hb_000091_090 Hb_000124_020 Hb_000124_020 Hb_000116_470--Hb_000124_020 Hb_000376_050 Hb_000376_050 Hb_000116_470--Hb_000376_050 Hb_002411_200 Hb_002411_200 Hb_000116_470--Hb_002411_200 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_022250_040 Hb_022250_040 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050 Hb_003151_050--Hb_000091_090 Hb_023386_080 Hb_023386_080 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_004108_050 Hb_004108_050 Hb_003151_050--Hb_004108_050 Hb_000429_170 Hb_000429_170 Hb_003151_050--Hb_000429_170 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040 Hb_000091_090--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_000091_090--Hb_000086_570 Hb_000091_090--Hb_002411_200 Hb_001881_020 Hb_001881_020 Hb_000091_090--Hb_001881_020 Hb_000983_100 Hb_000983_100 Hb_000091_090--Hb_000983_100 Hb_000622_310 Hb_000622_310 Hb_000124_020--Hb_000622_310 Hb_000056_100 Hb_000056_100 Hb_000124_020--Hb_000056_100 Hb_010863_080 Hb_010863_080 Hb_000124_020--Hb_010863_080 Hb_000179_210 Hb_000179_210 Hb_000124_020--Hb_000179_210 Hb_005147_090 Hb_005147_090 Hb_000124_020--Hb_005147_090 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_002411_200--Hb_021650_030 Hb_002411_200--Hb_000086_570 Hb_014720_080 Hb_014720_080 Hb_002411_200--Hb_014720_080 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3036 9.34336 1.12131 3.21839 13.0596 12.2673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9769 21.2051 21.4533 3.30979 1.97392

CAGE analysis