Hb_000116_480

Information

Type -
Description -
Location Contig116: 406200-417517
Sequence    

Annotation

kegg
ID rcu:RCOM_0280960
description zinc finger protein, putative
nr
ID XP_012087588.1
description PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
swissprot
ID Q14149
description MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3
trembl
ID B9T2L4
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0280960 PE=4 SV=1
Gene Ontology
ID GO:0008270
description morc family cw-type zinc finger protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04889: 406237-406747 , PASA_asmbl_04890: 407566-407693 , PASA_asmbl_04891: 412704-414483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_480 0.0 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
2 Hb_082609_020 0.0904986748 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000179_130 0.0945505346 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
4 Hb_001655_070 0.1001502496 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
5 Hb_009838_100 0.1006419097 - - hypothetical protein RCOM_1217340 [Ricinus communis]
6 Hb_000418_100 0.1026670606 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
7 Hb_005324_010 0.1065593443 - - Chaperone protein dnaJ, putative [Ricinus communis]
8 Hb_002400_070 0.1131203746 transcription factor TF Family: AUX/IAA PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Jatropha curcas]
9 Hb_000059_210 0.1150948052 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004223_090 0.1153001751 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
11 Hb_005306_130 0.1155474966 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_008103_120 0.1212242742 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
13 Hb_000062_240 0.1225269014 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
14 Hb_011472_040 0.1233142267 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
15 Hb_000483_360 0.1235096632 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
16 Hb_000291_110 0.124456572 - - eukaryotic translation initiation factor [Hevea brasiliensis]
17 Hb_001817_180 0.1252754234 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
18 Hb_003581_140 0.1257919079 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
19 Hb_003750_080 0.1259789864 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
20 Hb_001140_250 0.1281330079 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000116_480 Hb_000116_480 Hb_082609_020 Hb_082609_020 Hb_000116_480--Hb_082609_020 Hb_000179_130 Hb_000179_130 Hb_000116_480--Hb_000179_130 Hb_001655_070 Hb_001655_070 Hb_000116_480--Hb_001655_070 Hb_009838_100 Hb_009838_100 Hb_000116_480--Hb_009838_100 Hb_000418_100 Hb_000418_100 Hb_000116_480--Hb_000418_100 Hb_005324_010 Hb_005324_010 Hb_000116_480--Hb_005324_010 Hb_082609_020--Hb_000418_100 Hb_001584_330 Hb_001584_330 Hb_082609_020--Hb_001584_330 Hb_003777_330 Hb_003777_330 Hb_082609_020--Hb_003777_330 Hb_012634_010 Hb_012634_010 Hb_082609_020--Hb_012634_010 Hb_082609_020--Hb_009838_100 Hb_000062_240 Hb_000062_240 Hb_082609_020--Hb_000062_240 Hb_000179_130--Hb_009838_100 Hb_002400_310 Hb_002400_310 Hb_000179_130--Hb_002400_310 Hb_000227_240 Hb_000227_240 Hb_000179_130--Hb_000227_240 Hb_000331_210 Hb_000331_210 Hb_000179_130--Hb_000331_210 Hb_000179_130--Hb_000062_240 Hb_004055_010 Hb_004055_010 Hb_001655_070--Hb_004055_010 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_008959_030 Hb_008959_030 Hb_001655_070--Hb_008959_030 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_004221_010 Hb_004221_010 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_009838_100--Hb_000331_210 Hb_000009_170 Hb_000009_170 Hb_009838_100--Hb_000009_170 Hb_009838_100--Hb_000062_240 Hb_009838_100--Hb_000418_100 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_000418_100--Hb_000062_240 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_182026_020 Hb_182026_020 Hb_000418_100--Hb_182026_020 Hb_002609_110 Hb_002609_110 Hb_000418_100--Hb_002609_110 Hb_005306_130 Hb_005306_130 Hb_005324_010--Hb_005306_130 Hb_004734_060 Hb_004734_060 Hb_005324_010--Hb_004734_060 Hb_000209_020 Hb_000209_020 Hb_005324_010--Hb_000209_020 Hb_000953_010 Hb_000953_010 Hb_005324_010--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_005324_010--Hb_000836_360 Hb_033152_080 Hb_033152_080 Hb_005324_010--Hb_033152_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52179 4.4663 0.75834 2.48211 7.77866 8.49864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.14397 4.82606 6.98223 6.20545 0.225677

CAGE analysis