Hb_000116_500

Information

Type -
Description -
Location Contig116: 425097-432292
Sequence    

Annotation

kegg
ID rcu:RCOM_0281100
description hypothetical protein
nr
ID XP_012087584.1
description PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
swissprot
ID A6QLC7
description Trafficking protein particle complex subunit 11 OS=Bos taurus GN=TRAPPC11 PE=2 SV=1
trembl
ID A0A067JQ25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24301 PE=4 SV=1
Gene Ontology
ID GO:0005622
description trafficking protein particle complex subunit 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04893: 425137-432076 , PASA_asmbl_04894: 425137-432249 , PASA_asmbl_04895: 432961-433144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_500 0.0 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
2 Hb_002811_060 0.061074725 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
3 Hb_009545_100 0.0621292288 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
4 Hb_021297_050 0.0628882641 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
5 Hb_012022_090 0.0631221771 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
6 Hb_123903_010 0.0670413962 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
7 Hb_001195_320 0.0701651784 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
8 Hb_000313_260 0.0709113838 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_000390_320 0.0715211609 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
10 Hb_000213_010 0.0718972753 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
11 Hb_000029_300 0.0727217981 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
12 Hb_004306_080 0.0730425867 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
13 Hb_001199_100 0.07441109 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
14 Hb_009175_020 0.0752420179 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
15 Hb_017700_010 0.0754407111 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
16 Hb_005065_010 0.0756709328 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
17 Hb_004102_140 0.0770162741 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003029_110 0.0775426897 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
19 Hb_002785_050 0.0780625355 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
20 Hb_005211_100 0.0781100358 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]

Gene co-expression network

sample Hb_000116_500 Hb_000116_500 Hb_002811_060 Hb_002811_060 Hb_000116_500--Hb_002811_060 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_012022_090 Hb_012022_090 Hb_000116_500--Hb_012022_090 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320 Hb_002811_060--Hb_012022_090 Hb_005054_100 Hb_005054_100 Hb_002811_060--Hb_005054_100 Hb_003988_010 Hb_003988_010 Hb_002811_060--Hb_003988_010 Hb_000608_320 Hb_000608_320 Hb_002811_060--Hb_000608_320 Hb_006660_010 Hb_006660_010 Hb_002811_060--Hb_006660_010 Hb_002025_020 Hb_002025_020 Hb_009545_100--Hb_002025_020 Hb_000343_120 Hb_000343_120 Hb_009545_100--Hb_000343_120 Hb_000347_070 Hb_000347_070 Hb_009545_100--Hb_000347_070 Hb_003029_110 Hb_003029_110 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040 Hb_021297_050--Hb_001195_320 Hb_001860_040 Hb_001860_040 Hb_021297_050--Hb_001860_040 Hb_000667_030 Hb_000667_030 Hb_021297_050--Hb_000667_030 Hb_000213_010 Hb_000213_010 Hb_021297_050--Hb_000213_010 Hb_000029_300 Hb_000029_300 Hb_021297_050--Hb_000029_300 Hb_012022_090--Hb_000213_010 Hb_009548_020 Hb_009548_020 Hb_012022_090--Hb_009548_020 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100 Hb_143629_110 Hb_143629_110 Hb_123903_010--Hb_143629_110 Hb_009175_020 Hb_009175_020 Hb_123903_010--Hb_009175_020 Hb_002815_030 Hb_002815_030 Hb_123903_010--Hb_002815_030 Hb_000975_040 Hb_000975_040 Hb_123903_010--Hb_000975_040 Hb_000390_320 Hb_000390_320 Hb_123903_010--Hb_000390_320 Hb_032202_200 Hb_032202_200 Hb_123903_010--Hb_032202_200 Hb_000166_130 Hb_000166_130 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_002329_040 Hb_002329_040 Hb_001195_320--Hb_002329_040 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.173 17.906 12.9091 21.7046 33.1981 30.1794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1947 15.6847 23.1146 20.9071 18.4329

CAGE analysis