Hb_000116_570

Information

Type transcription factor
Description TF Family: ARID
Location Contig116: 484686-493525
Sequence    

Annotation

kegg
ID rcu:RCOM_0613120
description transcription factor, putative
nr
ID XP_012087576.1
description PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
swissprot
ID Q940Y3
description AT-rich interactive domain-containing protein 3 OS=Arabidopsis thaliana GN=ARID3 PE=1 SV=1
trembl
ID A0A067JQ21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24296 PE=3 SV=1
Gene Ontology
ID GO:0005634
description at-rich interactive domain-containing protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04904: 484702-493513 , PASA_asmbl_04905: 484702-493508 , PASA_asmbl_04906: 488319-488678 , PASA_asmbl_04907: 488143-493513 , PASA_asmbl_04908: 485687-485847 , PASA_asmbl_04909: 485313-485522
cDNA
(Sanger)
(ID:Location)		 012_J06.ab1: 492423-493513 , 024_L08.ab1: 492517-493513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_570 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
2 Hb_000016_280 0.0623646725 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
3 Hb_010883_080 0.0749851439 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
4 Hb_000093_130 0.0794803543 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_000685_080 0.0884950047 - - protein binding protein, putative [Ricinus communis]
6 Hb_001227_110 0.0967062804 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]
7 Hb_009646_050 0.102966694 - - conserved hypothetical protein [Ricinus communis]
8 Hb_101151_020 0.1039026181 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001922_130 0.1059556322 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
10 Hb_001703_130 0.1118848714 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
11 Hb_001473_190 0.1118858049 - - 50S ribosomal protein L20 [Hevea brasiliensis]
12 Hb_002609_010 0.1142259059 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
13 Hb_001247_230 0.1142692607 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_003125_060 0.1159222766 - - PREDICTED: snurportin-1 [Jatropha curcas]
15 Hb_000281_010 0.1160420714 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
16 Hb_002849_080 0.1174090982 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
17 Hb_001474_030 0.1196216476 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
18 Hb_009178_020 0.1219660134 - - PREDICTED: zinc finger protein 622 [Jatropha curcas]
19 Hb_001473_080 0.1228234171 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
20 Hb_002977_010 0.122912136 - - PREDICTED: F-box protein GID2 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_570 Hb_000116_570 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_010883_080 Hb_010883_080 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_000016_280--Hb_001227_110 Hb_000016_280--Hb_000685_080 Hb_003125_060 Hb_003125_060 Hb_000016_280--Hb_003125_060 Hb_000016_280--Hb_010883_080 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_000093_130--Hb_001227_110 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_007416_200 Hb_007416_200 Hb_000093_130--Hb_007416_200 Hb_074683_020 Hb_074683_020 Hb_000093_130--Hb_074683_020 Hb_000685_080--Hb_003125_060 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_001227_110--Hb_000025_750 Hb_001408_090 Hb_001408_090 Hb_001227_110--Hb_001408_090 Hb_000640_210 Hb_000640_210 Hb_001227_110--Hb_000640_210 Hb_025048_040 Hb_025048_040 Hb_001227_110--Hb_025048_040 Hb_009646_050--Hb_002977_010 Hb_000281_010 Hb_000281_010 Hb_009646_050--Hb_000281_010 Hb_009646_050--Hb_010883_080 Hb_009646_050--Hb_000016_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
370.388 250.402 78.5533 31.6844 381.573 284.65
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.3637 66.955 45.5699 48.6774 16.912

CAGE analysis