Hb_000117_010

Information

Type -
Description -
Location Contig117: 14390-15883
Sequence    

Annotation

kegg
ID mdm:103401440
description ankyrin repeat-containing protein At3g12360-like
nr
ID XP_008338373.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A078FU41
description BnaA02g11610D protein OS=Brassica napus GN=BnaA02g11610D PE=4 SV=1
Gene Ontology
ID GO:0005886
description leucine-rich repeat receptor-like protein kinase tdr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05256: 14487-15789
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_010 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
2 Hb_074961_010 0.0639377448 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
3 Hb_000117_020 0.1151234425 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_005271_150 0.1479729642 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
5 Hb_073339_010 0.155452699 - - hypothetical protein 30 [Hevea brasiliensis]
6 Hb_124587_010 0.169489141 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
7 Hb_023327_030 0.1727157348 - - osmotin-like protein [Hevea brasiliensis]
8 Hb_000878_040 0.1737955451 - - PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
9 Hb_103351_010 0.1808858395 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
10 Hb_006455_080 0.1827726844 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
11 Hb_077219_010 0.1856711212 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000866_420 0.1892645359 - - Remorin, putative [Ricinus communis]
13 Hb_002475_050 0.1908215463 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
14 Hb_001252_170 0.1908388023 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
15 Hb_002290_060 0.1917585307 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
16 Hb_000248_050 0.1922378945 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
17 Hb_002253_110 0.1924808496 - - cysteine desulfurylase, putative [Ricinus communis]
18 Hb_006455_110 0.1925933145 - - bromodomain-containing protein, putative [Ricinus communis]
19 Hb_006455_090 0.1958487674 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
20 Hb_000035_130 0.1984590602 - - hypothetical protein Csa_4G652025 [Cucumis sativus]

Gene co-expression network

sample Hb_000117_010 Hb_000117_010 Hb_074961_010 Hb_074961_010 Hb_000117_010--Hb_074961_010 Hb_000117_020 Hb_000117_020 Hb_000117_010--Hb_000117_020 Hb_005271_150 Hb_005271_150 Hb_000117_010--Hb_005271_150 Hb_073339_010 Hb_073339_010 Hb_000117_010--Hb_073339_010 Hb_124587_010 Hb_124587_010 Hb_000117_010--Hb_124587_010 Hb_023327_030 Hb_023327_030 Hb_000117_010--Hb_023327_030 Hb_074961_010--Hb_000117_020 Hb_002253_110 Hb_002253_110 Hb_074961_010--Hb_002253_110 Hb_000033_060 Hb_000033_060 Hb_074961_010--Hb_000033_060 Hb_000878_040 Hb_000878_040 Hb_074961_010--Hb_000878_040 Hb_074961_010--Hb_023327_030 Hb_103351_010 Hb_103351_010 Hb_000117_020--Hb_103351_010 Hb_000117_020--Hb_002253_110 Hb_000117_020--Hb_124587_010 Hb_000707_070 Hb_000707_070 Hb_000117_020--Hb_000707_070 Hb_012286_050 Hb_012286_050 Hb_005271_150--Hb_012286_050 Hb_020902_010 Hb_020902_010 Hb_005271_150--Hb_020902_010 Hb_001433_220 Hb_001433_220 Hb_005271_150--Hb_001433_220 Hb_013405_040 Hb_013405_040 Hb_005271_150--Hb_013405_040 Hb_000671_100 Hb_000671_100 Hb_005271_150--Hb_000671_100 Hb_000035_130 Hb_000035_130 Hb_073339_010--Hb_000035_130 Hb_005965_010 Hb_005965_010 Hb_073339_010--Hb_005965_010 Hb_006455_110 Hb_006455_110 Hb_073339_010--Hb_006455_110 Hb_001976_050 Hb_001976_050 Hb_073339_010--Hb_001976_050 Hb_006723_020 Hb_006723_020 Hb_073339_010--Hb_006723_020 Hb_012807_080 Hb_012807_080 Hb_073339_010--Hb_012807_080 Hb_124587_010--Hb_103351_010 Hb_124587_010--Hb_074961_010 Hb_124587_010--Hb_002253_110 Hb_121236_010 Hb_121236_010 Hb_124587_010--Hb_121236_010 Hb_002475_050 Hb_002475_050 Hb_023327_030--Hb_002475_050 Hb_005000_270 Hb_005000_270 Hb_023327_030--Hb_005000_270 Hb_000256_270 Hb_000256_270 Hb_023327_030--Hb_000256_270 Hb_079326_010 Hb_079326_010 Hb_023327_030--Hb_079326_010 Hb_002918_070 Hb_002918_070 Hb_023327_030--Hb_002918_070 Hb_003716_020 Hb_003716_020 Hb_023327_030--Hb_003716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.637 7.18388 6.96589 62.5459 88.8506 353.958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.0648 22.6649 72.5735 11.6846 9.09695

CAGE analysis