Hb_000117_040

Information

Type -
Description -
Location Contig117: 66109-70240
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012769mg
description hypothetical protein
nr
ID ADR71237.1
description 30S ribosomal protein S6A [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMK0
description 30S ribosomal protein S6A OS=Hevea brasiliensis GN=RPS6A PE=2 SV=1
Gene Ontology
ID GO:0005840
description structural constituent of

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05263: 66122-70241 , PASA_asmbl_05264: 66128-70240
cDNA
(Sanger)
(ID:Location)		 015_G07.ab1: 66753-70241 , 024_E14.ab1: 67876-70236 , 044_B20.ab1: 66847-70240

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000117_040 0.0 - - 30S ribosomal protein S6A [Hevea brasiliensis]
2 Hb_011609_190 0.0686822563 - - 14-3-3 protein 2 [Hevea brasiliensis]
3 Hb_000163_290 0.0877764744 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
4 Hb_026048_090 0.0887005163 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000371_110 0.0938646996 - - -
6 Hb_004813_010 0.0944485079 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000179_250 0.0961707595 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
8 Hb_001433_170 0.0977340547 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
9 Hb_000176_140 0.1016791044 - - PREDICTED: bystin [Jatropha curcas]
10 Hb_000771_140 0.1056924015 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
11 Hb_002044_090 0.1070663249 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
12 Hb_000481_010 0.1084298102 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
13 Hb_012654_020 0.109452553 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004738_090 0.1099638286 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000038_130 0.1111570637 - - -
16 Hb_001776_080 0.1113957689 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
17 Hb_001493_100 0.1119966413 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
18 Hb_004223_230 0.1128460386 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
19 Hb_000926_270 0.1135465924 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
20 Hb_000062_230 0.1138319714 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000117_040 Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000117_040--Hb_011609_190 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_011609_190--Hb_000179_250 Hb_012654_020 Hb_012654_020 Hb_011609_190--Hb_012654_020 Hb_001433_170 Hb_001433_170 Hb_011609_190--Hb_001433_170 Hb_002172_030 Hb_002172_030 Hb_011609_190--Hb_002172_030 Hb_000491_080 Hb_000491_080 Hb_011609_190--Hb_000491_080 Hb_006499_010 Hb_006499_010 Hb_000163_290--Hb_006499_010 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_003747_240 Hb_003747_240 Hb_000163_290--Hb_003747_240 Hb_000163_290--Hb_000371_110 Hb_001186_060 Hb_001186_060 Hb_000163_290--Hb_001186_060 Hb_009510_030 Hb_009510_030 Hb_026048_090--Hb_009510_030 Hb_127979_010 Hb_127979_010 Hb_026048_090--Hb_127979_010 Hb_000771_140 Hb_000771_140 Hb_026048_090--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_026048_090--Hb_000057_060 Hb_026048_090--Hb_001433_170 Hb_004126_010 Hb_004126_010 Hb_026048_090--Hb_004126_010 Hb_000371_110--Hb_001433_170 Hb_000371_110--Hb_001186_060 Hb_000371_110--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_000371_110--Hb_000138_040 Hb_001493_100 Hb_001493_100 Hb_004813_010--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230 Hb_000176_140 Hb_000176_140 Hb_000179_250--Hb_000176_140 Hb_000179_250--Hb_001433_170 Hb_000179_250--Hb_002044_090 Hb_011316_030 Hb_011316_030 Hb_000179_250--Hb_011316_030 Hb_001776_080 Hb_001776_080 Hb_000179_250--Hb_001776_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1421.42 207.296 71.2868 37.4708 1267.84 977.021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
748.989 743.048 720.165 126.966 35.3695

CAGE analysis